Non-Coding RNA Search

Ss1.1-Ova1-OVRM10205G02.5

Sequence:


               
               ACTGCTCACTCAGTACCGCTGCTTGGGGGCTGTAGTGACCGCGCCGCTCCTGCTGGGGGG
CTGCCCACGCCAAGGACCTGCCTCTGTGGTCTCCTCCGCCGCCGCCGCCCAGTGTCCCTG
GCAAGACCATCGCCCAAGATGGCAGAGGAGAGCAGCAGTGCCAGGGACTGCGTGTCCTTC
AGCGTGCTCAACTGGGACCAGGTGAGCCGGCTGCACGAGGTCCTGACCGAGGTGGTCCCC
ATCCACGGGCGAGGCAACTTCCCCACCTTGGAGATCACGCTGAAGGACATCGTCCAGACT
GTCCGCAGCCAGCTGGAGGAGGCGGGCATCAAAGTGCAGGACATCCGGCTGAACGGCTCT
GCGGCCGGCCACGTCTTGGTCAAAGACAACGGGTTGGGTTGCAAGGACCTGGACCTCATC
TTTCACGTGGCCCTTCCCACGGAGGCGGAGTTCCAGCTGGTCAGGGATGTGGTTCTGTGC
TCCCTCCTGAACTTCCTGCCAGAGGGCGTGAGCAAGCTCAAGATCAGTCCAGTCACCCTG
AAGGAGGCCTACGTCCAGAAGCTGGTGAAGGTCTGCACGGACACGGACCGCTGGAGCCTG
ATCTCCCTGTCCAACAAGAACGGCAGGAACGTGGAGCTGAAGTTTGTGGACTCCATCCGG
CGCCAGTTCGAGTTCAGCGTGGACTCGTTCCAGATCATCCTGGATTCCCTGCTCTTTTTC
TATGACTGCTCCAGCCACCCCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCTCACTCAGTACCGCTGCTTGGGGGCTGTAGTGACCGCGCCGCTCCTGCTGGGGGG
CTGCCCACGCCAAGGACCTGCCTCTGTGGTCTCCTCCGCCGCCGCCGCCCAGTGTCCCTG
GCAAGACCATCGCCCAAGATGGCAGAGGAGAGCAGCAGTGCCAGGGACTGCGTGTCCTTC
AGCGTGCTCAACTGGGACCAGGTGAGCCGGCTGCACGAGGTCCTGACCGAGGTGGTCCCC
ATCCACGGGCGAGGCAACTTCCCCACCTTGGAGATCACGCTGAAGGACATCGTCCAGACT
GTCCGCAGCCAGCTGGAGGAGGCGGGCATCAAAGTGCAGGACATCCGGCTGAACGGCTCT
GCGGCCGGCCACGTCTTGGTCAAAGACAACGGGTTGGGTTGCAAGGACCTGGACCTCATC
TTTCACGTGGCCCTTCCCACGGAGGCGGAGTTCCAGCTGGTCAGGGATGTGGTTCTGTGC
TCCCTCCTGAACTTCCTGCCAGAGGGCGTGAGCAAGCTCAAGATCAGTCCAGTCACCCTG
AAGGAGGCCTACGTCCAGAAGCTGGTGAAGGTCTGCACGGACACGGACCGCTGGAGCCTG
ATCTCCCTGTCCAACAAGAACGGCAGGAACGTGGAGCTGAAGTTTGTGGACTCCATCCGG
CGCCAGTTCGAGTTCAGCGTGGACTCGTTCCAGATCATCCTGGATTCCCTGCTCTTTTTC
TATGACTGCTCCAGCCACCCCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55726391|emb|CAH89965.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55726391|emb|CAH89965.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-103, gnl|bosTau2|chr3 (22290745-22290847)
               

               
               1-103, gnl|dasNov1|scaffold_52987 (3496-3581)
               

               
               1-103, gnl|echTel1|scaffold_310976 (82579-82492)
               

               
               1-103, gnl|hg17|chr1 (117860710-117860796)
               

               
               1-103, gnl|Hg17|chr1 (117860710-117860814)
               

               
               1-103, gnl|mm7|chr3 (100284020-100283934)
               

               
               1-103, gnl|Mm7|chr3 (100284018-100283914)
               

               
               1-103, gnl|monDom2|scaffold_82 (4010085-4010176)
               

               
               1-103, gnl|oryCun1|scaffold_214171 (191006-190920)
               

               
               1-103, gnl|panTro1|chr1 (117704532-117704618)
               

               
               1-103, gnl|rheMac2|chr1 (120581989-120582075)
               

               
               1-103, gnl|rn3|chr2 (195444584-195444498)
               


               
               301-743, gnl|bosTau2|chr2 (79339722-79340164)
               

               
               301-743, gnl|Hg17|chr1 (27017587-27017145)
               

               
               301-743, gnl|Mm7|chr4 (132864520-132864962)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-103, gnl|bosTau2|chr3 (22290745-22290847)
               

               
               1-103, gnl|dasNov1|scaffold_52987 (3496-3581)
               

               
               1-103, gnl|echTel1|scaffold_310976 (82579-82492)
               

               
               1-103, gnl|hg17|chr1 (117860710-117860796)
               

               
               1-103, gnl|Hg17|chr1 (117860710-117860814)
               

               
               1-103, gnl|mm7|chr3 (100284020-100283934)
               

               
               1-103, gnl|Mm7|chr3 (100284018-100283914)
               

               
               1-103, gnl|monDom2|scaffold_82 (4010085-4010176)
               

               
               1-103, gnl|oryCun1|scaffold_214171 (191006-190920)
               

               
               1-103, gnl|panTro1|chr1 (117704532-117704618)
               

               
               1-103, gnl|rheMac2|chr1 (120581989-120582075)
               

               
               1-103, gnl|rn3|chr2 (195444584-195444498)
               


               
               301-743, gnl|bosTau2|chr2 (79339722-79340164)
               

               
               301-743, gnl|Hg17|chr1 (27017587-27017145)
               

               
               301-743, gnl|Mm7|chr4 (132864520-132864962)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	1-103, gnl\|bosTau2\|chr3 (22290745-22290847)
	1-103, gnl\|dasNov1\|scaffold_52987 (3496-3581)
	1-103, gnl\|echTel1\|scaffold_310976 (82579-82492)
	1-103, gnl\|hg17\|chr1 (117860710-117860796)
	1-103, gnl\|Hg17\|chr1 (117860710-117860814)
	1-103, gnl\|mm7\|chr3 (100284020-100283934)
	1-103, gnl\|Mm7\|chr3 (100284018-100283914)
	1-103, gnl\|monDom2\|scaffold_82 (4010085-4010176)
	1-103, gnl\|oryCun1\|scaffold_214171 (191006-190920)
	1-103, gnl\|panTro1\|chr1 (117704532-117704618)
	1-103, gnl\|rheMac2\|chr1 (120581989-120582075)
	1-103, gnl\|rn3\|chr2 (195444584-195444498)

	301-743, gnl\|bosTau2\|chr2 (79339722-79340164)
	301-743, gnl\|Hg17\|chr1 (27017587-27017145)
	301-743, gnl\|Mm7\|chr4 (132864520-132864962)