Ss1.1-Ova1-OVRM10206G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCATCTATTGAGGAAAACCGCAAAAAACTTCAAAACAGCTACAACGGTATCCTAAGAA GATTTCAACTGTATACAAGTACCTTTGTTCAAGGCACCTAACTATTAAAAAACTGAAATT GTCAACAGTGCTTGGATTTTTGATAGAAAAAGAACAAAAACCACTTTCTGAAACTATTTT TCAGAAGGTCATCAATACATAAAAACTTTTAGCATCTAATTAAAGATCACTAAGGGTTAA ATACTTGTTCTCTTCACCCTCCCACTTGGGGCTATTGCAAGCCATGACCATCTATTGAGG AAAACCGCAAAAAACTTCAAAACAGCTACAACGGGAAAAAGAGAGTATTGTCCCACAGTC AGCAGGCCACTAGCTTATTAACTTCCAGACACCTTAATTTTTGCTAAAATGAAGACTCTG CAATCTACACTTCTCTTGTTCCTGTTTGTGCCTCTGATAAAGCCAGCACCACCATCTCAG CAGGACTCTCGCATTATCTCTGATTATGGAACAAATAATTTTGAAGAAACCTTATTTAGC CAAGATTATGAGGATAAATACCTGGATGGAAAAAGTATTAAGGAAAAAGAGGCTATCAGA ATACCTGATGAGAAAAGTTTTGAATTACAAAAAGACGAGAGTACAATACCATTATCCCCC AAGAAAGAAAACGATGAAATGCCCACATGTCTGCTGTGTGTTTGTTTAAGTGGCTCTGTA TACTGTGAAGAAATTGACATTAAAGCTGTACCACCCTTGCCAAAGGAATCAGCCTATCTT TATGCACGATTCAACAAAATTAAAAAGTTGACTGCCAAAGATTTTGCAGATATACCTAAC TTAAGACGACTTGATTTTACGGGAAATTTGATTGAAGATATAGAAGATGGCACTTTCTCA AAACTCTCTCTGTTAGAAGAACTTATACTAGCTGACAATCAACTACTGAAACTTCCAGTT CTCCCTCCTAAGCTTACGTTATTTAATGCAAAACGCAACAAAATCAAGAGTAGGGGAATA AAAGCAAATGCATTCAAAAAATTGAATAAACTCTCCTTCCTCTACCTGGACCACAATGCC CTGGAATCCGTGCCTCTTAATTTACCAGAAAGTCTGCGTATAATTCATCTTCAGGGTAAC AACATAACTTCAATTACAGATGACACATTCTGCAAGGCTAATGACACCAGTTATATTCGG GATCACATTGAAGAGATACGCTTGGAAGATAATCCCATCATCCTGGGAAAATATCCCAAC AGTTTTATCTGCTTAAAAAGACTGCCTATAGGGTCATACATCTAGTCACTATCAACACAA CATATAAGCTAAAGTAGACACATACTTATAATCTGTTTCAACATGTCTAAAGGAGCATAA ATATTTAATATTAATTTTGTATCCTACTATGAAGGAACCTACGTTTTAGGAAAGGGTGTT CAAAAATCTTACATATAACAATAACTAGAAAGTAAGATTGAATCTCTAAAACAAAGTAAT GTCAATATACTTGAACAGCATTATAAAATCCTTGTAGTTTATTCTAGAATACCATTTAAA AGGTCCTTTTTTATATAAGTACTCAAACTTAAAAAGCATTACTAAGTGAGAGGACATGTC CAAAAAACACTCAAAAGGTTGTCTTTCCTGGCTGCTACTGGATCCCTGAAGCATTTAAGG CACATGCTCCAAAAACTTTGAAAACCTAAATATTTCCAGTGGTCTCCCACTCTCATTTTA TGATTCATTAATATTCATTATGAAGTGGGAAATCTATTTTCTTTCTATTAAGGCAGCTAC TATATTTTTACTTAGCCTGAGAAATAGGGAATAGTCTCATACCTAGGAAAAACTTTACAA ATAAAGTACAATTTTTACTCTCAAATAAAGAGCTAATTTAGTAATGTTCAGTTATTCTGC TTTGTAGTCACACAGTTAAAGGATTTAGTAAAATAATACATTTTCTTTAATCAAAATATT AACATTCTGAGTCTACCATAACACATTTTAAGAAGTCAAGCAGGGAGTTCCCATTTTGGC ACAGCAGAAATCAATCTGACTAGTATCCATGAGGATGCCGGTACGATCCCTGGCCTCATT CAGTGGGTCAGGGATCAACATTGCGGTGAGCTGTGGGGTAGGTCCCTGATGCGGCTCAAA TCCTTGTTGCTATGGCTATGGTGTGGGCTGGCAGCTGTACCTCCAATTTGACCCCTAGCC TGGGAACTTCCATATATTGTGGGTATAGCCCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCATCTATTGAGGAAAACCGCAAAAAACTTCAAAACAGCTACAACGGTATCCTAAGAA GATTTCAACTGTATACAAGTACCTTTGTTCAAGGCACCTAACTATTAAAAAACTGAAATT GTCAACAGTGCTTGGATTTTTGATAGAAAAAGAACAAAAACCACTTTCTGAAACTATTTT TCAGAAGGTCATCAATACATAAAAACTTTTAGCATCTAATTAAAGATCACTAAGGGTTAA ATACTTGTTCTCTTCACCCTCCCACTTGGGGCTATTGCAAGCCATGACCATCTATTGAGG AAAACCGCAAAAAACTTCAAAACAGCTACAACGGGAAAAAGAGAGTATTGTCCCACAGTC AGCAGGCCACTAGCTTATTAACTTCCAGACACCTTAATTTTTGCTAAAATGAAGACTCTG CAATCTACACTTCTCTTGTTCCTGTTTGTGCCTCTGATAAAGCCAGCACCACCATCTCAG CAGGACTCTCGCATTATCTCTGATTATGGAACAAATAATTTTGAAGAAACCTTATTTAGC CAAGATTATGAGGATAAATACCTGGATGGAAAAAGTATTAAGGAAAAAGAGGCTATCAGA ATACCTGATGAGAAAAGTTTTGAATTACAAAAAGACGAGAGTACAATACCATTATCCCCC AAGAAAGAAAACGATGAAATGCCCACATGTCTGCTGTGTGTTTGTTTAAGTGGCTCTGTA TACTGTGAAGAAATTGACATTAAAGCTGTACCACCCTTGCCAAAGGAATCAGCCTATCTT TATGCACGATTCAACAAAATTAAAAAGTTGACTGCCAAAGATTTTGCAGATATACCTAAC TTAAGACGACTTGATTTTACGGGAAATTTGATTGAAGATATAGAAGATGGCACTTTCTCA AAACTCTCTCTGTTAGAAGAACTTATACTAGCTGACAATCAACTACTGAAACTTCCAGTT CTCCCTCCTAAGCTTACGTTATTTAATGCAAAACGCAACAAAATCAAGAGTAGGGGAATA AAAGCAAATGCATTCAAAAAATTGAATAAACTCTCCTTCCTCTACCTGGACCACAATGCC CTGGAATCCGTGCCTCTTAATTTACCAGAAAGTCTGCGTATAATTCATCTTCAGGGTAAC AACATAACTTCAATTACAGATGACACATTCTGCAAGGCTAATGACACCAGTTATATTCGG GATCACATTGAAGAGATACGCTTGGAAGATAATCCCATCATCCTGGGAAAATATCCCAAC AGTTTTATCTGCTTAAAAAGACTGCCTATAGGGTCATACATCTAGTCACTATCAACACAA CATATAAGCTAAAGTAGACACATACTTATAATCTGTTTCAACATGTCTAAAGGAGCATAA ATATTTAATATTAATTTTGTATCCTACTATGAAGGAACCTACGTTTTAGGAAAGGGTGTT CAAAAATCTTACATATAACAATAACTAGAAAGTAAGATTGAATCTCTAAAACAAAGTAAT GTCAATATACTTGAACAGCATTATAAAATCCTTGTAGTTTATTCTAGAATACCATTTAAA AGGTCCTTTTTTATATAAGTACTCAAACTTAAAAAGCATTACTAAGTGAGAGGACATGTC CAAAAAACACTCAAAAGGTTGTCTTTCCTGGCTGCTACTGGATCCCTGAAGCATTTAAGG CACATGCTCCAAAAACTTTGAAAACCTAAATATTTCCAGTGGTCTCCCACTCTCATTTTA TGATTCATTAATATTCATTATGAAGTGGGAAATCTATTTTCTTTCTATTAAGGCAGCTAC TATATTTTTACTTAGCCTGAGAAATAGGGAATAGTCTCATACCTAGGAAAAACTTTACAA ATAAAGTACAATTTTTACTCTCAAATAAAGAGCTAATTTAGTAATGTTCAGTTATTCTGC TTTGTAGTCACACAGTTAAAGGATTTAGTAAAATAATACATTTTCTTTAATCAAAATATT AACATTCTGAGTCTACCATAACACATTTTAAGAAGTCAAGCAGGGAGTTCCCATTTTGGC ACAGCAGAAATCAATCTGACTAGTATCCATGAGGATGCCGGTACGATCCCTGGCCTCATT CAGTGGGTCAGGGATCAACATTGCGGTGAGCTGTGGGGTAGGTCCCTGATGCGGCTCAAA TCCTTGTTGCTATGGCTATGGTGTGGGCTGGCAGCTGTACCTCCAATTTGACCCCTAGCC TGGGAACTTCCATATATTGTGGGTATAGCCCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1211-1330, - strand, RNAz p=0.915887 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1211-1330, - strand, RNAz p=0.915887 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 48-583, gnl|bosTau2|chr8 (46577664-46578192) | |
| 48-583, gnl|Hg17|chr9 (92245602-92245070) | |
| 48-583, gnl|Mm7|chr13 (49092717-49093235) | |
| 836-1038, gnl|bosTau2|chr8 (46588257-46588459) | |
| 836-1038, gnl|canFam2|chr1 (102023413-102023180) | |
| 836-1038, gnl|danRer3|chr6 (30560763-30561000) | |
| 836-1038, gnl|dasNov1|scaffold_9743 (6085-6318) | |
| 836-1038, gnl|echTel1|scaffold_251876 (2643-2412) | |
| 836-1038, gnl|fr1|chrUn (232069748-232069991) | |
| 836-1038, gnl|galGal2|chr12 (3497745-3497516) | |
| 836-1038, gnl|hg17|chr9 (92231682-92231915) | |
| 836-1038, gnl|Hg17|chr9 (92231893-92231691) | |
| 836-1038, gnl|loxAfr1|scaffold_33333 (1600-1367) | |
| 836-1038, gnl|mm7|chr13 (49102183-49101950) | |
| 836-1038, gnl|Mm7|chr13 (49101970-49102172) | |
| 836-1038, gnl|oryCun1|scaffold_198223 (6330-6566) | |
| 836-1038, gnl|panTro1|chrUn_random (27787755-27787988) | |
| 836-1038, gnl|rheMac2|chr15 (104295018-104295251) | |
| 836-1038, gnl|rn3|chr17 (20993401-20993634) | |
| 836-1038, gnl|tetNig1|chrUn_random (102795424-102795190) | |
| 836-1038, gnl|xenTro1|scaffold_425 (341407-341637) | |
| 1132-2022, gnl|bosTau2|chr8 (46591439-46592341) | |
| 1132-2022, gnl|Hg17|chr9 (92227630-92226730) | |
| 1132-2022, gnl|Mm7|chr13 (49106687-49107506) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-583, gnl|bosTau2|chr8 (46577664-46578192) | |
| 48-583, gnl|Hg17|chr9 (92245602-92245070) | |
| 48-583, gnl|Mm7|chr13 (49092717-49093235) | |
| 836-1038, gnl|bosTau2|chr8 (46588257-46588459) | |
| 836-1038, gnl|canFam2|chr1 (102023413-102023180) | |
| 836-1038, gnl|danRer3|chr6 (30560763-30561000) | |
| 836-1038, gnl|dasNov1|scaffold_9743 (6085-6318) | |
| 836-1038, gnl|echTel1|scaffold_251876 (2643-2412) | |
| 836-1038, gnl|fr1|chrUn (232069748-232069991) | |
| 836-1038, gnl|galGal2|chr12 (3497745-3497516) | |
| 836-1038, gnl|hg17|chr9 (92231682-92231915) | |
| 836-1038, gnl|Hg17|chr9 (92231893-92231691) | |
| 836-1038, gnl|loxAfr1|scaffold_33333 (1600-1367) | |
| 836-1038, gnl|mm7|chr13 (49102183-49101950) | |
| 836-1038, gnl|Mm7|chr13 (49101970-49102172) | |
| 836-1038, gnl|oryCun1|scaffold_198223 (6330-6566) | |
| 836-1038, gnl|panTro1|chrUn_random (27787755-27787988) | |
| 836-1038, gnl|rheMac2|chr15 (104295018-104295251) | |
| 836-1038, gnl|rn3|chr17 (20993401-20993634) | |
| 836-1038, gnl|tetNig1|chrUn_random (102795424-102795190) | |
| 836-1038, gnl|xenTro1|scaffold_425 (341407-341637) | |
| 1132-2022, gnl|bosTau2|chr8 (46591439-46592341) | |
| 1132-2022, gnl|Hg17|chr9 (92227630-92226730) | |
| 1132-2022, gnl|Mm7|chr13 (49106687-49107506) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| eep (0.735384) | |
| cty (0.5204) | |
| eru (0.480192) | |
| nca (0.410621) | |
| elu (0.385356) | |
| fce (0.271592) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.735384) | |
| cty (0.5204) | |
| eru (0.480192) | |
| nca (0.410621) | |
| elu (0.385356) | |
| fce (0.271592) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) | |
| eje (0.0988338) |