Non-Coding RNA Search

Ss1.1-Ova1-OVRM10207A07.5

Sequence:


               
               AGTACGAGAAGAGGGCCCGGCTCGCCCCAGTTGGCTGCCCGTGCCAGTGGGGTGAGAACG
AGTGCAGACCGGGCTCTGGGGTCCCGGCCAGAGACAACGTAGATCCAGGAGTGGCGCGCG
CCATCTCAACGGGATGTTCAGATGGAGGCCGGAGGAGACATTGCTGCCCCAGCCCCCGGG
GACGCGGAGGACTTGGAGGACACGCGGTTCCCCAGTGAGGAAGCTAGAGATGGTGGAGGG
GTTCAAGAGGACCCGCCCGATCCTGGAGATGGAAGCGTGGAGGAAACAGGATCCGAGACC
AAGGACCAGCCACCCAGCCTGCCGCTCCTGTCAGAGGCTCCATCATGCCCCTATGGGTTC
TGGGGTCCTGCAGCCTCTGAGAGTTGTCCCATGGGTGGCCCTGAGAGTGGCTCAGGGGCC
CAGGGCGGGGACCCCAGTGACGAGGACTGGCGCAGCAAGAGGAAGCACGTGTTTGTGCTG
AGTGAAGCCGGGAAGCCCATCTACTCTCGGTACGGTAGCGTGGAGGCACTGTCAACAACC
ATGGGCGTGATGACAGCCCTCGTGTCTTTTGTGCAGAGTGCAGGAGATGCCATCCGTGCC
ATCTATGCTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACGAGAAGAGGGCCCGGCTCGCCCCAGTTGGCTGCCCGTGCCAGTGGGGTGAGAACG
AGTGCAGACCGGGCTCTGGGGTCCCGGCCAGAGACAACGTAGATCCAGGAGTGGCGCGCG
CCATCTCAACGGGATGTTCAGATGGAGGCCGGAGGAGACATTGCTGCCCCAGCCCCCGGG
GACGCGGAGGACTTGGAGGACACGCGGTTCCCCAGTGAGGAAGCTAGAGATGGTGGAGGG
GTTCAAGAGGACCCGCCCGATCCTGGAGATGGAAGCGTGGAGGAAACAGGATCCGAGACC
AAGGACCAGCCACCCAGCCTGCCGCTCCTGTCAGAGGCTCCATCATGCCCCTATGGGTTC
TGGGGTCCTGCAGCCTCTGAGAGTTGTCCCATGGGTGGCCCTGAGAGTGGCTCAGGGGCC
CAGGGCGGGGACCCCAGTGACGAGGACTGGCGCAGCAAGAGGAAGCACGTGTTTGTGCTG
AGTGAAGCCGGGAAGCCCATCTACTCTCGGTACGGTAGCGTGGAGGCACTGTCAACAACC
ATGGGCGTGATGACAGCCCTCGTGTCTTTTGTGCAGAGTGCAGGAGATGCCATCCGTGCC
ATCTATGCTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H8Q7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H8Q7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               357-495, + strand, RNAz p=0.964369

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-495, + strand, RNAz p=0.964369

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               287-610, gnl|bosTau2|chr18 (5002028-5001705)
               

               
               287-610, gnl|Hg17|chr16 (75784846-75785175)
               

               
               287-610, gnl|Mm7|chr8 (112236758-112237105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               287-610, gnl|bosTau2|chr18 (5002028-5001705)
               

               
               287-610, gnl|Hg17|chr16 (75784846-75785175)
               

               
               287-610, gnl|Mm7|chr8 (112236758-112237105)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	287-610, gnl\|bosTau2\|chr18 (5002028-5001705)
	287-610, gnl\|Hg17\|chr16 (75784846-75785175)
	287-610, gnl\|Mm7\|chr8 (112236758-112237105)