Ss1.1-Ova1-OVRM10208G10.5
|
AAAAGTTCATTTCCAATATCCAGAGTCTCTCAACACTTTTCACTTTCTATTCAGCCATGT
TCTTGACTCATTCTTGGCCAAGAATGAATAATATTTTCACTAAAATGTTATGATTTCCTA
GGACTTTTACGCCAGGCTGGCTTTGAATCCACTCTCCCCTCTTTGGGGAGAGATCAATGA
ATGTAGCTTCTAGCGATTTAATCTTGCGAGAGGAATCCTATGGTATCCGTGATAACTTGT
CACTTGGGAAGTTCACCTTCTCCTGGATGGAAAGTAATATTCCATTTTTGGTTTTTGTTG
TTGCTATTGTTTTTGTTTTTAAGTTTTCAGCAGGTGATTCTATGTATAAATGGATTTGTA
CCTGTCTGTTTTGAGCAGAAGGAAGATGGAGAGGGAAAATATACTCCCTGTTTCCACACC
TTTGTATTTGATAATTATTTGCCTGTTTGAAGTAATTTGTGAATGGCTTTTGTAAAGGAC
TTAAGCAGGACTAGAAAACCAGTCATGTTTAATCAGTTTTTCTGCAGTATTTTTTTGAGG
TAAGACTACTGCCTAGGAGTGTAACAAACTGTAAGTCACACATTCACAAAAATAGTTCAC
CTTATTCATTTTAAACAACAGAAAAGTACACTGTAAACAAAAGTTGTTTTGTTGGAAGCG
GAATGTGAATGTTCACCTATACACAAGGTTTGACTATCAAAAGGAAAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAGTTCATTTCCAATATCCAGAGTCTCTCAACACTTTTCACTTTCTATTCAGCCATGT
TCTTGACTCATTCTTGGCCAAGAATGAATAATATTTTCACTAAAATGTTATGATTTCCTA
GGACTTTTACGCCAGGCTGGCTTTGAATCCACTCTCCCCTCTTTGGGGAGAGATCAATGA
ATGTAGCTTCTAGCGATTTAATCTTGCGAGAGGAATCCTATGGTATCCGTGATAACTTGT
CACTTGGGAAGTTCACCTTCTCCTGGATGGAAAGTAATATTCCATTTTTGGTTTTTGTTG
TTGCTATTGTTTTTGTTTTTAAGTTTTCAGCAGGTGATTCTATGTATAAATGGATTTGTA
CCTGTCTGTTTTGAGCAGAAGGAAGATGGAGAGGGAAAATATACTCCCTGTTTCCACACC
TTTGTATTTGATAATTATTTGCCTGTTTGAAGTAATTTGTGAATGGCTTTTGTAAAGGAC
TTAAGCAGGACTAGAAAACCAGTCATGTTTAATCAGTTTTTCTGCAGTATTTTTTTGAGG
TAAGACTACTGCCTAGGAGTGTAACAAACTGTAAGTCACACATTCACAAAAATAGTTCAC
CTTATTCATTTTAAACAACAGAAAAGTACACTGTAAACAAAAGTTGTTTTGTTGGAAGCG
GAATGTGAATGTTCACCTATACACAAGGTTTGACTATCAAAAGGAAAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
99-284, BP461190 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP461190.1|), blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
99-284, BP461190 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP461190.1|), blast E-value=0, identity=100% |
|
99-535, gnl|bosTau2|chr10 (51635001-51635439) |
|
99-535, gnl|Hg17|chr14 (64007421-64006697) |
| |
|
555-708, gnl|bosTau2|chr10 (51635495-51635645) |
|
555-708, gnl|canFam2|chr8 (41928415-41928816) |
|
555-708, gnl|dasNov1|scaffold_94302 (11008-11415) |
|
555-708, gnl|echTel1|scaffold_310249 (23320-22913) |
|
555-708, gnl|hg17|chr14 (64006297-64006701) |
|
555-708, gnl|Hg17|chr14 (64006642-64006507) |
|
555-708, gnl|loxAfr1|scaffold_2075 (58072-58516) |
|
555-708, gnl|mm7|chr12 (74288396-74288707) |
|
555-708, gnl|monDom2|scaffold_8 (78155422-78155697) |
|
555-708, gnl|oryCun1|scaffold_205866 (52740-53095) |
|
555-708, gnl|panTro1|chr15 (63574113-63574512) |
|
555-708, gnl|rheMac2|chr7 (127468282-127468686) |
|
555-708, gnl|rn3|chr6 (98932087-98932408) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
99-535, gnl|bosTau2|chr10 (51635001-51635439) |
|
99-535, gnl|Hg17|chr14 (64007421-64006697) |
| |
|
555-708, gnl|bosTau2|chr10 (51635495-51635645) |
|
555-708, gnl|canFam2|chr8 (41928415-41928816) |
|
555-708, gnl|dasNov1|scaffold_94302 (11008-11415) |
|
555-708, gnl|echTel1|scaffold_310249 (23320-22913) |
|
555-708, gnl|hg17|chr14 (64006297-64006701) |
|
555-708, gnl|Hg17|chr14 (64006642-64006507) |
|
555-708, gnl|loxAfr1|scaffold_2075 (58072-58516) |
|
555-708, gnl|mm7|chr12 (74288396-74288707) |
|
555-708, gnl|monDom2|scaffold_8 (78155422-78155697) |
|
555-708, gnl|oryCun1|scaffold_205866 (52740-53095) |
|
555-708, gnl|panTro1|chr15 (63574113-63574512) |
|
555-708, gnl|rheMac2|chr7 (127468282-127468686) |
|
555-708, gnl|rn3|chr6 (98932087-98932408) |
