Non-Coding RNA Search

Ss1.1-Ova1-OVRM10208H11.5

Sequence:


               
               AGCAAGATGGCGGACGCCAAAGATGGTGTTTTGCGGCCGGCGGGATCCTCCACCGCCCCA
GTTTCATTCAGCTTCAGTCGGACGTCCAACCGGAAACGCTTGGCAGGAGACGCGGCTCCG
GAGGAGAAGGATTTCTTGAAGACCGTTGAAGGGAGGGAGCTGCAGAGTGTGAAGCCTTCA
GAAGCCCCCACGGAGCTTGTCATCCCTTTGATCAAGAATGGCCACCGCAGGCAGCCAACC
ACCCAGGCCCCTGGGCCATCCACACTTCCTGAGGTCTTGGCGGATGGGATGCTGTCCCAG
GCTGTGAAGGAGATCATCGAGGAATCCAAGAAGTCCCTGGAGGAGAGAGAGAATGCGGGT
GTCGACCCCACGCTCGCTATCCCCATGATCCAGAAAGGATGCACCCCAGCGCATCCTGGG
CAAGGGGCAGACAGCGAACCCCGGGCTGAGACAGTGCCGGAGGAGGCTGATTACGAGGCA
GTCCCTGTGGAGGCCTATGGGCTGGCCATGCTGCGGGGCATGGGCTGGAAACCCGGCGAG
GGCATTGGCCGCACCTTCAATCAAGTGGTGAAGCCCCGTGTCAACTCACTGAGGCCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAGATGGCGGACGCCAAAGATGGTGTTTTGCGGCCGGCGGGATCCTCCACCGCCCCA
GTTTCATTCAGCTTCAGTCGGACGTCCAACCGGAAACGCTTGGCAGGAGACGCGGCTCCG
GAGGAGAAGGATTTCTTGAAGACCGTTGAAGGGAGGGAGCTGCAGAGTGTGAAGCCTTCA
GAAGCCCCCACGGAGCTTGTCATCCCTTTGATCAAGAATGGCCACCGCAGGCAGCCAACC
ACCCAGGCCCCTGGGCCATCCACACTTCCTGAGGTCTTGGCGGATGGGATGCTGTCCCAG
GCTGTGAAGGAGATCATCGAGGAATCCAAGAAGTCCCTGGAGGAGAGAGAGAATGCGGGT
GTCGACCCCACGCTCGCTATCCCCATGATCCAGAAAGGATGCACCCCAGCGCATCCTGGG
CAAGGGGCAGACAGCGAACCCCGGGCTGAGACAGTGCCGGAGGAGGCTGATTACGAGGCA
GTCCCTGTGGAGGCCTATGGGCTGGCCATGCTGCGGGGCATGGGCTGGAAACCCGGCGAG
GGCATTGGCCGCACCTTCAATCAAGTGGTGAAGCCCCGTGTCAACTCACTGAGGCCCAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61888450|ref|XP_616889.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61888450|ref|XP_616889.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-174, gnl|bosTau2|chrX (25941353-25941182)
               

               
               2-174, gnl|Hg17|chrX (48736326-48736140)
               

               
               2-174, gnl|Mm7|chrX (6130371-6130551)
               


               
               454-563, gnl|bosTau2|chrX (25938010-25937901)
               

               
               454-563, gnl|canFam2|chrX (42203185-42203302)
               

               
               454-563, gnl|danRer3|chr8 (33156085-33156190)
               

               
               454-563, gnl|echTel1|scaffold_264504 (11907-11790)
               

               
               454-563, gnl|hg17|chrX (48732303-48732420)
               

               
               454-563, gnl|Hg17|chrX (48732416-48732307)
               

               
               454-563, gnl|loxAfr1|scaffold_80199 (4494-4377)
               

               
               454-563, gnl|mm7|chrX (6135328-6135211)
               

               
               454-563, gnl|Mm7|chrX (6135213-6135322)
               

               
               454-563, gnl|rheMac2|chrX (46985377-46985494)
               

               
               454-563, gnl|rn3|chrX (26895237-26895354)
               

               
               454-563, gnl|tetNig1|chr9 (9055561-9055444)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-174, gnl|bosTau2|chrX (25941353-25941182)
               

               
               2-174, gnl|Hg17|chrX (48736326-48736140)
               

               
               2-174, gnl|Mm7|chrX (6130371-6130551)
               


               
               454-563, gnl|bosTau2|chrX (25938010-25937901)
               

               
               454-563, gnl|canFam2|chrX (42203185-42203302)
               

               
               454-563, gnl|danRer3|chr8 (33156085-33156190)
               

               
               454-563, gnl|echTel1|scaffold_264504 (11907-11790)
               

               
               454-563, gnl|hg17|chrX (48732303-48732420)
               

               
               454-563, gnl|Hg17|chrX (48732416-48732307)
               

               
               454-563, gnl|loxAfr1|scaffold_80199 (4494-4377)
               

               
               454-563, gnl|mm7|chrX (6135328-6135211)
               

               
               454-563, gnl|Mm7|chrX (6135213-6135322)
               

               
               454-563, gnl|rheMac2|chrX (46985377-46985494)
               

               
               454-563, gnl|rn3|chrX (26895237-26895354)
               

               
               454-563, gnl|tetNig1|chr9 (9055561-9055444)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	2-174, gnl\|bosTau2\|chrX (25941353-25941182)
	2-174, gnl\|Hg17\|chrX (48736326-48736140)
	2-174, gnl\|Mm7\|chrX (6130371-6130551)

	454-563, gnl\|bosTau2\|chrX (25938010-25937901)
	454-563, gnl\|canFam2\|chrX (42203185-42203302)
	454-563, gnl\|danRer3\|chr8 (33156085-33156190)
	454-563, gnl\|echTel1\|scaffold_264504 (11907-11790)
	454-563, gnl\|hg17\|chrX (48732303-48732420)
	454-563, gnl\|Hg17\|chrX (48732416-48732307)
	454-563, gnl\|loxAfr1\|scaffold_80199 (4494-4377)
	454-563, gnl\|mm7\|chrX (6135328-6135211)
	454-563, gnl\|Mm7\|chrX (6135213-6135322)
	454-563, gnl\|rheMac2\|chrX (46985377-46985494)
	454-563, gnl\|rn3\|chrX (26895237-26895354)
	454-563, gnl\|tetNig1\|chr9 (9055561-9055444)