Non-Coding RNA Search

Ss1.1-Ova1-OVRM10209A12.5

Sequence:


               
               GCGGCCGCTCGTGTCGGCAGTGTGAACAGTCCTTCCACACCCCCAACAGCCTGCGCAAAC
ACATCCGCAACAACCATGACACAGTAAAGANAGTCTACACTTGTGGGTATTGCACAGAGG
ACAGCCCCAGCTTTCCTCGGCCCTCCCTCCTGGAGAGCCACATCAGCCTTATGCATGGGA
TCCGAAACCCCGACTTGAGCCAGACGCCCAGAGTCAGGCCTCCGGGTGGACATTCCCCTC
AGGTGAACCATCTGAAAAGACCAGTCAGCGGAGCGGGGGATGCTCCAGACACCAGCAACG
GCTCGACTGTCTCTTCCACCAAAAGACATAAGTCCCTTTTCCAGTGTGCGAAATGTAGCT
TTGCCACAGACTCGGGGCTCGAGTTTCAGAGCCACATACCTCAGCACCAGAAGGACAGTT
CCACAGCCCAGTGTCTCCTCTGTGGCTTGTGCTACACCTCTGCCAGCTCCCTCAGCCGCC
ACCTCTTCATTGTTCACAAGGTGAGAGACCAGGAGGAAGAAGAGGCGGAGGCGGCAGAGG
CAGAGGAGGGCTCCGGGGAGGAGGTGCCCATGGAGACCAGGGAGAATGGACTGGAAGAAT
GTGCTGGAGAGCCTCTGTTGGGCGATTCAGAGGCAAGGAGGTCACTGGGCCTGGCCCCTG
ACAAGGACAGTGCCCGAGATGCTCAGAGTCAACAGGCCTCTCAGGACCAGGACAGCCGCA
CACAGTGCCCGCAGGTGTGACCAGAGGCTTTGCAGTGTGCAGTCAGGGTGGTGCCGCTGT
GTCCTCCACCTGCTCTCTGGACAGTGGGAAAAGAAAGGCTCCACCCTGATGTGAGTGTGG
CTGCCTGTGCCCTGGAGCACTGTCTGCCCTAAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTCGTGTCGGCAGTGTGAACAGTCCTTCCACACCCCCAACAGCCTGCGCAAAC
ACATCCGCAACAACCATGACACAGTAAAGANAGTCTACACTTGTGGGTATTGCACAGAGG
ACAGCCCCAGCTTTCCTCGGCCCTCCCTCCTGGAGAGCCACATCAGCCTTATGCATGGGA
TCCGAAACCCCGACTTGAGCCAGACGCCCAGAGTCAGGCCTCCGGGTGGACATTCCCCTC
AGGTGAACCATCTGAAAAGACCAGTCAGCGGAGCGGGGGATGCTCCAGACACCAGCAACG
GCTCGACTGTCTCTTCCACCAAAAGACATAAGTCCCTTTTCCAGTGTGCGAAATGTAGCT
TTGCCACAGACTCGGGGCTCGAGTTTCAGAGCCACATACCTCAGCACCAGAAGGACAGTT
CCACAGCCCAGTGTCTCCTCTGTGGCTTGTGCTACACCTCTGCCAGCTCCCTCAGCCGCC
ACCTCTTCATTGTTCACAAGGTGAGAGACCAGGAGGAAGAAGAGGCGGAGGCGGCAGAGG
CAGAGGAGGGCTCCGGGGAGGAGGTGCCCATGGAGACCAGGGAGAATGGACTGGAAGAAT
GTGCTGGAGAGCCTCTGTTGGGCGATTCAGAGGCAAGGAGGTCACTGGGCCTGGCCCCTG
ACAAGGACAGTGCCCGAGATGCTCAGAGTCAACAGGCCTCTCAGGACCAGGACAGCCGCA
CACAGTGCCCGCAGGTGTGACCAGAGGCTTTGCAGTGTGCAGTCAGGGTGGTGCCGCTGT
GTCCTCCACCTGCTCTCTGGACAGTGGGAAAAGAAAGGCTCCACCCTGATGTGAGTGTGG
CTGCCTGTGCCCTGGAGCACTGTCTGCCCTAAGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               106-224, + strand, RNAz p=0.963551

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-224, + strand, RNAz p=0.963551

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               106-246, gnl|bosTau2|chr21 (12815030-12815170)
               

               
               106-246, gnl|canFam2|chr3 (56913146-56913278)
               

               
               106-246, gnl|danRer3|chrUn (51951051-51950916)
               

               
               106-246, gnl|dasNov1|scaffold_8313 (12602-12469)
               

               
               106-246, gnl|echTel1|scaffold_323129 (50865-50998)
               

               
               106-246, gnl|fr1|chrUn (200543714-200543601)
               

               
               106-246, gnl|galGal2|chr10 (1666993-1666868)
               

               
               106-246, gnl|hg17|chr15 (83144070-83144203)
               

               
               106-246, gnl|Hg17|chr15 (83144076-83144216)
               

               
               106-246, gnl|loxAfr1|scaffold_23855 (463-596)
               

               
               106-246, gnl|mm7|chr7 (76910566-76910699)
               

               
               106-246, gnl|Mm7|chr7 (76910572-76910712)
               

               
               106-246, gnl|monDom2|scaffold_45 (786106-786239)
               

               
               106-246, gnl|oryCun1|scaffold_199616 (10402-10535)
               

               
               106-246, gnl|panTro1|chr16 (83949224-83949357)
               

               
               106-246, gnl|rheMac2|chr7 (64497178-64497045)
               

               
               106-246, gnl|rn3|chr1 (137317176-137317309)
               

               
               106-246, gnl|tetNig1|chr13 (2191187-2191072)
               

               
               106-246, gnl|xenTro1|scaffold_62 (2028028-2027918)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-246, gnl|bosTau2|chr21 (12815030-12815170)
               

               
               106-246, gnl|canFam2|chr3 (56913146-56913278)
               

               
               106-246, gnl|danRer3|chrUn (51951051-51950916)
               

               
               106-246, gnl|dasNov1|scaffold_8313 (12602-12469)
               

               
               106-246, gnl|echTel1|scaffold_323129 (50865-50998)
               

               
               106-246, gnl|fr1|chrUn (200543714-200543601)
               

               
               106-246, gnl|galGal2|chr10 (1666993-1666868)
               

               
               106-246, gnl|hg17|chr15 (83144070-83144203)
               

               
               106-246, gnl|Hg17|chr15 (83144076-83144216)
               

               
               106-246, gnl|loxAfr1|scaffold_23855 (463-596)
               

               
               106-246, gnl|mm7|chr7 (76910566-76910699)
               

               
               106-246, gnl|Mm7|chr7 (76910572-76910712)
               

               
               106-246, gnl|monDom2|scaffold_45 (786106-786239)
               

               
               106-246, gnl|oryCun1|scaffold_199616 (10402-10535)
               

               
               106-246, gnl|panTro1|chr16 (83949224-83949357)
               

               
               106-246, gnl|rheMac2|chr7 (64497178-64497045)
               

               
               106-246, gnl|rn3|chr1 (137317176-137317309)
               

               
               106-246, gnl|tetNig1|chr13 (2191187-2191072)
               

               
               106-246, gnl|xenTro1|scaffold_62 (2028028-2027918)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	106-246, gnl\|bosTau2\|chr21 (12815030-12815170)
	106-246, gnl\|canFam2\|chr3 (56913146-56913278)
	106-246, gnl\|danRer3\|chrUn (51951051-51950916)
	106-246, gnl\|dasNov1\|scaffold_8313 (12602-12469)
	106-246, gnl\|echTel1\|scaffold_323129 (50865-50998)
	106-246, gnl\|fr1\|chrUn (200543714-200543601)
	106-246, gnl\|galGal2\|chr10 (1666993-1666868)
	106-246, gnl\|hg17\|chr15 (83144070-83144203)
	106-246, gnl\|Hg17\|chr15 (83144076-83144216)
	106-246, gnl\|loxAfr1\|scaffold_23855 (463-596)
	106-246, gnl\|mm7\|chr7 (76910566-76910699)
	106-246, gnl\|Mm7\|chr7 (76910572-76910712)
	106-246, gnl\|monDom2\|scaffold_45 (786106-786239)
	106-246, gnl\|oryCun1\|scaffold_199616 (10402-10535)
	106-246, gnl\|panTro1\|chr16 (83949224-83949357)
	106-246, gnl\|rheMac2\|chr7 (64497178-64497045)
	106-246, gnl\|rn3\|chr1 (137317176-137317309)
	106-246, gnl\|tetNig1\|chr13 (2191187-2191072)
	106-246, gnl\|xenTro1\|scaffold_62 (2028028-2027918)