Non-Coding RNA Search

Ss1.1-Ova1-OVRM10210E04.5

Sequence:


               
               CCGCCGGCCGCTGACGCCGCCGAGCCCGACGACATGGGGCCGAAGAGGGGCGCGGGGGCC
CCCAAGGAGTGCGGGGAGGAGGAGGCCCGGACGTGCTGCGGCTGCCGGTTCCCGCTGCTG
CTGGCGCTGCTGCAGCTGGCCCTGGGCATCGCCGTGACCGTGGTGGGCTTTCTCATGGCC
GGCATCAGCTCCTCCCTGCTAGTCAGAGACACTCCATTTTGGGCTGGGATCATTGTCTGC
TTAGTGGCCTATCTTGGTTTGTTTATGCTCTGTGTCTCATATCAAGTTGACGAACGGACA
TGTATCCAGTTTGCTATGAAACTCTTGTACTTTCTGCTGAGCGCCTTTGGCCTGATGGTC
TGTGTGCTGGCCGTGGCCTTCGCTGCTCACCACTATGCCCAGCTCACCCAGTTGACCTGT
GGAACCGCACTCGACGCCTGCCAGTGCAAACTGCCCTCCTCAGAGCCCCTCAGCAGGACC
TTTGTGTACCGGGATGTGACTGATTGTACCAGCATCACTGGCACTTTCAAACTGTTCTTA
CTCATCCAGATGATTCTGAACTTGGTCTGCGGCCTTGTGTGCTTGTTGGCCTGTTTTATG
ATGTGGAAACACAGGTACCAGGTCTTTTATGTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCGGCCGCTGACGCCGCCGAGCCCGACGACATGGGGCCGAAGAGGGGCGCGGGGGCC
CCCAAGGAGTGCGGGGAGGAGGAGGCCCGGACGTGCTGCGGCTGCCGGTTCCCGCTGCTG
CTGGCGCTGCTGCAGCTGGCCCTGGGCATCGCCGTGACCGTGGTGGGCTTTCTCATGGCC
GGCATCAGCTCCTCCCTGCTAGTCAGAGACACTCCATTTTGGGCTGGGATCATTGTCTGC
TTAGTGGCCTATCTTGGTTTGTTTATGCTCTGTGTCTCATATCAAGTTGACGAACGGACA
TGTATCCAGTTTGCTATGAAACTCTTGTACTTTCTGCTGAGCGCCTTTGGCCTGATGGTC
TGTGTGCTGGCCGTGGCCTTCGCTGCTCACCACTATGCCCAGCTCACCCAGTTGACCTGT
GGAACCGCACTCGACGCCTGCCAGTGCAAACTGCCCTCCTCAGAGCCCCTCAGCAGGACC
TTTGTGTACCGGGATGTGACTGATTGTACCAGCATCACTGGCACTTTCAAACTGTTCTTA
CTCATCCAGATGATTCTGAACTTGGTCTGCGGCCTTGTGTGCTTGTTGGCCTGTTTTATG
ATGTGGAAACACAGGTACCAGGTCTTTTATGTGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|939923|emb|CAA61479.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|939923|emb|CAA61479.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-175, gnl|bosTau2|chr5 (51118843-51118672)
               

               
               1-175, gnl|Hg17|chr12 (26239918-26240092)
               

               
               1-175, gnl|Mm7|chr6 (146024621-146024785)
               


               
               317-636, gnl|bosTau2|chr5 (51481961-51481642)
               

               
               317-636, gnl|Hg17|chr12 (26274906-26275225)
               

               
               317-636, gnl|Mm7|chr6 (146051598-146051917)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr5 (51118843-51118672)
               

               
               1-175, gnl|Hg17|chr12 (26239918-26240092)
               

               
               1-175, gnl|Mm7|chr6 (146024621-146024785)
               


               
               317-636, gnl|bosTau2|chr5 (51481961-51481642)
               

               
               317-636, gnl|Hg17|chr12 (26274906-26275225)
               

               
               317-636, gnl|Mm7|chr6 (146051598-146051917)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

	1-175, gnl\|bosTau2\|chr5 (51118843-51118672)
	1-175, gnl\|Hg17\|chr12 (26239918-26240092)
	1-175, gnl\|Mm7\|chr6 (146024621-146024785)

	317-636, gnl\|bosTau2\|chr5 (51481961-51481642)
	317-636, gnl\|Hg17\|chr12 (26274906-26275225)
	317-636, gnl\|Mm7\|chr6 (146051598-146051917)