Non-Coding RNA Search

Ss1.1-Ova1-OVRM10210G02.5

Sequence:


               
               GGAAGCGACGTTCTTGGCGTCGTCTTCTCCACCCCCCTCTTCCTGGGGGTCGAGATGTCC
GGGCTTAGTCATGCAGAGATGGAGGGCTGTCGTAACCTGCTCGGCCTGCTGAACAACGAC
GAAATCCTGGCCCTATGTGACACCATCACCAACCGCCTAGTGCAGCCTGAAGACCGCCAA
GATGCCATTCGTGCAATATTAGTGTACAGTCAAAGTGTAGAAGAACTTTTGAAACGTAGA
AAAGTCCACCGCGAAGTCATATTTAAGTACTTGGCAACACAAGGGGTTATTATACCTCCA
GCTACAGAAAAACACAATCTTATTCAGCATGCAAAGGATTACTGGAAAAAACAATTACAC
TGGAAATTGAAGGAAACACCAGAGCCAGTTAAGACAGAGGACGTTAGAGTCTTTGAACAG
GAAAAAGAAGATAATAAAGCTGAAAAGATTGATTTTCGTCGATTAGGTGAAGAATTCTGT
CACTGGTTCTTTGAACTTCTTAATTCTCAGAATCCTTTTCTGGGACCACCTCAAGATGAA
TGGGGGCCACAGCACTTCTGGCATGATGTCAAGCTTAGGTTTTATTATAACACATCTGAA
CAAAATGTGATAGACTACCATGGAGCAGAAATTGTGAGCCTTCGTTTGCTGTCACTAGTG
AAAGAAGAATATCTTTTTCTCAGTCCCAACCTAGATTCCCATGGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCGACGTTCTTGGCGTCGTCTTCTCCACCCCCCTCTTCCTGGGGGTCGAGATGTCC
GGGCTTAGTCATGCAGAGATGGAGGGCTGTCGTAACCTGCTCGGCCTGCTGAACAACGAC
GAAATCCTGGCCCTATGTGACACCATCACCAACCGCCTAGTGCAGCCTGAAGACCGCCAA
GATGCCATTCGTGCAATATTAGTGTACAGTCAAAGTGTAGAAGAACTTTTGAAACGTAGA
AAAGTCCACCGCGAAGTCATATTTAAGTACTTGGCAACACAAGGGGTTATTATACCTCCA
GCTACAGAAAAACACAATCTTATTCAGCATGCAAAGGATTACTGGAAAAAACAATTACAC
TGGAAATTGAAGGAAACACCAGAGCCAGTTAAGACAGAGGACGTTAGAGTCTTTGAACAG
GAAAAAGAAGATAATAAAGCTGAAAAGATTGATTTTCGTCGATTAGGTGAAGAATTCTGT
CACTGGTTCTTTGAACTTCTTAATTCTCAGAATCCTTTTCTGGGACCACCTCAAGATGAA
TGGGGGCCACAGCACTTCTGGCATGATGTCAAGCTTAGGTTTTATTATAACACATCTGAA
CAAAATGTGATAGACTACCATGGAGCAGAAATTGTGAGCCTTCGTTTGCTGTCACTAGTG
AAAGAAGAATATCTTTTTCTCAGTCCCAACCTAGATTCCCATGGACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12832663|dbj|BAB22202.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12832663|dbj|BAB22202.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-181, gnl|bosTau2|chr1 (20024412-20024237)
               

               
               1-181, gnl|Hg17|chr3 (88281850-88282025)
               

               
               1-181, gnl|Mm7|chr16 (64717369-64717195)
               


               
               418-707, gnl|bosTau2|chr1 (20019375-20019086)
               

               
               418-707, gnl|Hg17|chr3 (88287861-88288150)
               

               
               418-707, gnl|Mm7|chr16 (64713379-64713091)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-181, gnl|bosTau2|chr1 (20024412-20024237)
               

               
               1-181, gnl|Hg17|chr3 (88281850-88282025)
               

               
               1-181, gnl|Mm7|chr16 (64717369-64717195)
               


               
               418-707, gnl|bosTau2|chr1 (20019375-20019086)
               

               
               418-707, gnl|Hg17|chr3 (88287861-88288150)
               

               
               418-707, gnl|Mm7|chr16 (64713379-64713091)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               tes (0.207814)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               cty (0.10408)

	1-181, gnl\|bosTau2\|chr1 (20024412-20024237)
	1-181, gnl\|Hg17\|chr3 (88281850-88282025)
	1-181, gnl\|Mm7\|chr16 (64717369-64717195)

	418-707, gnl\|bosTau2\|chr1 (20019375-20019086)
	418-707, gnl\|Hg17\|chr3 (88287861-88288150)
	418-707, gnl\|Mm7\|chr16 (64713379-64713091)

	cte (0.29274)
	tes (0.207814)
	fat (0.147427)
	nca (0.136874)
	cty (0.10408)