Ss1.1-Ova1-OVRM10211A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCAGCCGTTCGACGTGGGCCCGCGCTACACGCAGCTGCAATACATCGGCGAGGGCGC GTACGGCATGGTCAGCTCAGCTTACGACCATGTGCGCAAGACTCGAGTGGCCATCAAGAA AATCAGCCCTTTTGAGCATCAGACCTACTGCCAGCGGACCTTGCGAGAGATCCAGATCTT GCTACGCTTCCGCCACGAGAACGTCATTGGCATCCGAGACATTCTGCGGGCACCCACCCT GGAAGCCATGAGGGATGTCTACATTGTGCAGGACCTGATGGAGACAGACCTGTACAAGTT GCTCAAAAGCCAGCAGCTGAGCAACGACCACATCTGCTACTTCCTCTACCAGATCCTGCG GGGCCTCAAATACATCCACTCCGCCAACGTGCTCCACCGGGATTTAAAGCCCTCCAACCT GCTCATCAACACCACCTGCGACCTTAAGATCTGTGACTTTGGCCTTGCCCGGATCGCGGA TCCCGAGCATGACCACACTGGCTTCTTGACGGAATATGTGGCCACGCGCTGGTACCGGGC CCCAGAGATCATGCTTAACTCCAAGGGCTACACCAAGTCCATAGACATTTGGTCTGTGGG CTGCATTCTGGCTGAGATGCTCTCCAACCGGCCTATCTTCCCGGGCAAGCACTACCTGGA CCAGCTCAACCACATTCTGGGTATCCTGGGCTCCCCATCCCAGGAGGACCTAAATTGTAT CATCAACATGAAGGCCCGAAACTACCTGCAGTCTCTGCCCTCCAAGACCAAGGTGGCCTG GGCCAAGCTTTTCCCCAAGTCGGACCCCAAAGCTCTTGACCTGCTGGACCGGATGTTGAC CTTTAACCCCAACAAACGGATCACAGTGGAGGAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCAGCCGTTCGACGTGGGCCCGCGCTACACGCAGCTGCAATACATCGGCGAGGGCGC GTACGGCATGGTCAGCTCAGCTTACGACCATGTGCGCAAGACTCGAGTGGCCATCAAGAA AATCAGCCCTTTTGAGCATCAGACCTACTGCCAGCGGACCTTGCGAGAGATCCAGATCTT GCTACGCTTCCGCCACGAGAACGTCATTGGCATCCGAGACATTCTGCGGGCACCCACCCT GGAAGCCATGAGGGATGTCTACATTGTGCAGGACCTGATGGAGACAGACCTGTACAAGTT GCTCAAAAGCCAGCAGCTGAGCAACGACCACATCTGCTACTTCCTCTACCAGATCCTGCG GGGCCTCAAATACATCCACTCCGCCAACGTGCTCCACCGGGATTTAAAGCCCTCCAACCT GCTCATCAACACCACCTGCGACCTTAAGATCTGTGACTTTGGCCTTGCCCGGATCGCGGA TCCCGAGCATGACCACACTGGCTTCTTGACGGAATATGTGGCCACGCGCTGGTACCGGGC CCCAGAGATCATGCTTAACTCCAAGGGCTACACCAAGTCCATAGACATTTGGTCTGTGGG CTGCATTCTGGCTGAGATGCTCTCCAACCGGCCTATCTTCCCGGGCAAGCACTACCTGGA CCAGCTCAACCACATTCTGGGTATCCTGGGCTCCCCATCCCAGGAGGACCTAAATTGTAT CATCAACATGAAGGCCCGAAACTACCTGCAGTCTCTGCCCTCCAAGACCAAGGTGGCCTG GGCCAAGCTTTTCCCCAAGTCGGACCCCAAAGCTCTTGACCTGCTGGACCGGATGTTGAC CTTTAACCCCAACAAACGGATCACAGTGGAGGAAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 532-651, + strand, RNAz p=0.987005 | |
| 564-682, + strand, RNAz p=0.97715 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 532-651, + strand, RNAz p=0.987005 | |
| 564-682, + strand, RNAz p=0.97715 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 259-704, gnl|bosTau2|chr19 (26941411-26941862) | |
| 259-704, gnl|canFam2|chr5 (43835082-43834602) | |
| 259-704, gnl|danRer3|chr12 (665581-665117) | |
| 259-704, gnl|dasNov1|scaffold_122170 (3577-4072) | |
| 259-704, gnl|echTel1|scaffold_284977 (6089-6568) | |
| 259-704, gnl|fr1|chrUn (113245533-113246009) | |
| 259-704, gnl|hg17|chr17 (19224475-19224958) | |
| 259-704, gnl|Hg17|chr17 (19224514-19224965) | |
| 259-704, gnl|loxAfr1|scaffold_42400 (10729-10249) | |
| 259-704, gnl|mm7|chr11 (61573279-61572802) | |
| 259-704, gnl|Mm7|chr11 (61573244-61572793) | |
| 259-704, gnl|monDom2|scaffold_19 (7467268-7467761) | |
| 259-704, gnl|oryCun1|scaffold_136184 (10283-9808) | |
| 259-704, gnl|panTro1|chr19 (19550177-19550660) | |
| 259-704, gnl|rheMac2|chr16 (18931466-18931949) | |
| 259-704, gnl|rn3|chr10 (47665740-47665263) | |
| 259-704, gnl|tetNig1|chr15 (7019167-7019644) | |
| 259-704, gnl|xenTro1|scaffold_284 (10676-10204) | |
| 260-451, gnl|bosTau2|chr17 (45548136-45547945) | |
| 260-451, gnl|canFam2|chr26 (34117038-34117274) | |
| 260-451, gnl|danRer3|chr5 (3547401-3547179) | |
| 260-451, gnl|dasNov1|scaffold_114726 (3825-4061) | |
| 260-451, gnl|echTel1|scaffold_55628 (5294-5058) | |
| 260-451, gnl|fr1|chrUn (129153407-129153618) | |
| 260-451, gnl|galGal2|chr15 (503579-503342) | |
| 260-451, gnl|hg17|chr22 (20484671-20484907) | |
| 260-451, gnl|Hg17|chr22 (20484881-20484690) | |
| 260-451, gnl|loxAfr1|scaffold_11360 (41002-41238) | |
| 260-451, gnl|mm7|chr16 (16568231-16567993) | |
| 260-451, gnl|Mm7|chr16 (16568019-16568210) | |
| 260-451, gnl|monDom2|scaffold_214 (779165-778944) | |
| 260-451, gnl|oryCun1|scaffold_124602 (1711-1501) | |
| 260-451, gnl|panTro1|chr23 (20512678-20512914) | |
| 260-451, gnl|rheMac2|chr10 (65562868-65563103) | |
| 260-451, gnl|tetNig1|chr12 (3778597-3778808) | |
| 260-451, gnl|xenTro1|scaffold_118 (215575-215357) | |
| 564-683, gnl|bosTau2|chr17 (45538657-45538538) | |
| 564-683, gnl|canFam2|chr26 (34102459-34102621) | |
| 564-683, gnl|danRer3|chr5 (3551301-3551141) | |
| 564-683, gnl|dasNov1|scaffold_51538 (10492-10610) | |
| 564-683, gnl|echTel1|scaffold_279930 (8196-8042) | |
| 564-683, gnl|fr1|chrUn (129152177-129152321) | |
| 564-683, gnl|galGal2|chr15 (508541-508371) | |
| 564-683, gnl|hg17|chr22 (20467532-20467694) | |
| 564-683, gnl|Hg17|chr22 (20467653-20467534) | |
| 564-683, gnl|loxAfr1|scaffold_11360 (24670-24823) | |
| 564-683, gnl|mm7|chr16 (16575879-16575732) | |
| 564-683, gnl|Mm7|chr16 (16575756-16575875) | |
| 564-683, gnl|monDom2|scaffold_214 (789808-789661) | |
| 564-683, gnl|oryCun1|scaffold_169844 (1253-1100) | |
| 564-683, gnl|panTro1|chr23 (20495996-20496160) | |
| 564-683, gnl|rheMac2|chr10 (65546804-65546966) | |
| 564-683, gnl|rn3|chr11 (86026489-86026637) | |
| 564-683, gnl|tetNig1|chr12 (3777973-3778152) | |
| 564-683, gnl|xenTro1|scaffold_118 (217303-217178) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 259-704, gnl|bosTau2|chr19 (26941411-26941862) | |
| 259-704, gnl|canFam2|chr5 (43835082-43834602) | |
| 259-704, gnl|danRer3|chr12 (665581-665117) | |
| 259-704, gnl|dasNov1|scaffold_122170 (3577-4072) | |
| 259-704, gnl|echTel1|scaffold_284977 (6089-6568) | |
| 259-704, gnl|fr1|chrUn (113245533-113246009) | |
| 259-704, gnl|hg17|chr17 (19224475-19224958) | |
| 259-704, gnl|Hg17|chr17 (19224514-19224965) | |
| 259-704, gnl|loxAfr1|scaffold_42400 (10729-10249) | |
| 259-704, gnl|mm7|chr11 (61573279-61572802) | |
| 259-704, gnl|Mm7|chr11 (61573244-61572793) | |
| 259-704, gnl|monDom2|scaffold_19 (7467268-7467761) | |
| 259-704, gnl|oryCun1|scaffold_136184 (10283-9808) | |
| 259-704, gnl|panTro1|chr19 (19550177-19550660) | |
| 259-704, gnl|rheMac2|chr16 (18931466-18931949) | |
| 259-704, gnl|rn3|chr10 (47665740-47665263) | |
| 259-704, gnl|tetNig1|chr15 (7019167-7019644) | |
| 259-704, gnl|xenTro1|scaffold_284 (10676-10204) | |
| 260-451, gnl|bosTau2|chr17 (45548136-45547945) | |
| 260-451, gnl|canFam2|chr26 (34117038-34117274) | |
| 260-451, gnl|danRer3|chr5 (3547401-3547179) | |
| 260-451, gnl|dasNov1|scaffold_114726 (3825-4061) | |
| 260-451, gnl|echTel1|scaffold_55628 (5294-5058) | |
| 260-451, gnl|fr1|chrUn (129153407-129153618) | |
| 260-451, gnl|galGal2|chr15 (503579-503342) | |
| 260-451, gnl|hg17|chr22 (20484671-20484907) | |
| 260-451, gnl|Hg17|chr22 (20484881-20484690) | |
| 260-451, gnl|loxAfr1|scaffold_11360 (41002-41238) | |
| 260-451, gnl|mm7|chr16 (16568231-16567993) | |
| 260-451, gnl|Mm7|chr16 (16568019-16568210) | |
| 260-451, gnl|monDom2|scaffold_214 (779165-778944) | |
| 260-451, gnl|oryCun1|scaffold_124602 (1711-1501) | |
| 260-451, gnl|panTro1|chr23 (20512678-20512914) | |
| 260-451, gnl|rheMac2|chr10 (65562868-65563103) | |
| 260-451, gnl|tetNig1|chr12 (3778597-3778808) | |
| 260-451, gnl|xenTro1|scaffold_118 (215575-215357) | |
| 564-683, gnl|bosTau2|chr17 (45538657-45538538) | |
| 564-683, gnl|canFam2|chr26 (34102459-34102621) | |
| 564-683, gnl|danRer3|chr5 (3551301-3551141) | |
| 564-683, gnl|dasNov1|scaffold_51538 (10492-10610) | |
| 564-683, gnl|echTel1|scaffold_279930 (8196-8042) | |
| 564-683, gnl|fr1|chrUn (129152177-129152321) | |
| 564-683, gnl|galGal2|chr15 (508541-508371) | |
| 564-683, gnl|hg17|chr22 (20467532-20467694) | |
| 564-683, gnl|Hg17|chr22 (20467653-20467534) | |
| 564-683, gnl|loxAfr1|scaffold_11360 (24670-24823) | |
| 564-683, gnl|mm7|chr16 (16575879-16575732) | |
| 564-683, gnl|Mm7|chr16 (16575756-16575875) | |
| 564-683, gnl|monDom2|scaffold_214 (789808-789661) | |
| 564-683, gnl|oryCun1|scaffold_169844 (1253-1100) | |
| 564-683, gnl|panTro1|chr23 (20495996-20496160) | |
| 564-683, gnl|rheMac2|chr10 (65546804-65546966) | |
| 564-683, gnl|rn3|chr11 (86026489-86026637) | |
| 564-683, gnl|tetNig1|chr12 (3777973-3778152) | |
| 564-683, gnl|xenTro1|scaffold_118 (217303-217178) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) |