Ss1.1-Ova1-OVRM10211D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTTGGCGGCGGCGGAGTGAGGCTGACAAGGGGGAACTGGGAGCCCCCTCTCCTGGCGA CAGGAGCGGCCGATCCCCGGCCCCGGCGCGAGGGGCGGCCGCGATGCGCTCGGCCTGAGG CAGACCGGCCCGGCCCTTCCTTGCTTCCCTTGACTGTCCCACGGCGTCTGTGCGCCCCAG CGTCATCCCGAGAGTCCCCCTGACGGGAGGGAAGATGGCTGCACGGAGCTGGCAGGACGA GCTGGCCCACCAGGCCGAGGAGGGCTCGGCCCGGCTACGAGAAATGCTCTCGGTCGGCCT AAGCTTTCTGCGCACCGAGCTGGGCCTCGACCTGGGGCTGGAGCCGAAGCGGTACCCGGG CTGGGTGATCCTGGTGGGCACGGGCGCCCTCGGGCTGCTGCTGCTCTTCCTGCTCGGCTA CGGCTGGGCCGCGGCTTGCGCCGGCGCCCGCAAAAAGCGGAGGAGCCCGCCCCGCAAGCG GGAGGAGGCGGCGGCCTCGCCAGCCCCGGCCGCTGATGACCTAGCCCTGCTCAAGAATCT CAGGAACGAGGAGCAGAAGAAGAAGAACCGAAAGAAATTGCCCGAGAAGCCCAAACCAAA TGGACGGACTGTTGAAGTAGCCGAGGAGGAGGTCGTCCGAACTCCTCGAAACGTAACAGC AAAGCAGCCTCCAGAGACAGACAAGAAAAATGAAAAGTCAAAGAAAAATAAGAAGAAATC AAAGTCAGATGCTAAAGCAGTGCAAAACAGTTCACGCCATGATGGAAAGGAAGTTGATGA AGGAGCCTGGGAAACTAAAATTAGTCACAGAGAGAAACGACAGCAGCGTAAACGTGATAA GGTGCAGACTGATTCTGGTTCATTGGATTCAACTATCCCTGGGATAGAAAATATCATCAC AGTTACCACCGAGCAAGTTACAACTGCATCATTTCCTGTTGGTTCCAAGAAGAATAAAGG TGATTCTCATCTAAATGTTCAAGTTAGCAACTTTAAGTCTGGAAAAGGAGAGTCTACACT TCAGGTTTCTTCAGGATTGAATGAAAACCTCACTGTAAATGGAGGAGGCTGGAATGAAAA GTCTGTAAAACTTCCCTCACAGATCAGTGCAGGTGAGGAGAAGTGGAACTCTGTTTCACC TGCCTCTGCAGGCAAGAGGAAAACTGAGCCATCTGCTTGGGGTCAAGACACTGGAGAGGC TAATGCAAATGGAAAGGACTGGGGAAGGAGTTGGAGTGACCGTTCAATATTTTCTGGCAT TGGGTCTACTGCTGAGCCAGTTTCTCAGTCTACTACTTCTGATTATCAGTGGGATGCTAG CGGTAATCAACCCTATATCGATGATGAATGGTCTGGGTTAAATGGTCTGTCTTCTGCTGA TCCCAGCTCTGATTGGAACGCGCCAGCAGAGGAGTGGGGGAATTGGGTAGAGGAAGAAAG AGCTTCACTTCTAAAGTCCCAGGAACCAATTCCTGATGATCAAAAAGTTTCAGATGATGA TAAAGAAAAGGGAGAGGGAGCTCTTCCAACCGGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTTGGCGGCGGCGGAGTGAGGCTGACAAGGGGGAACTGGGAGCCCCCTCTCCTGGCGA CAGGAGCGGCCGATCCCCGGCCCCGGCGCGAGGGGCGGCCGCGATGCGCTCGGCCTGAGG CAGACCGGCCCGGCCCTTCCTTGCTTCCCTTGACTGTCCCACGGCGTCTGTGCGCCCCAG CGTCATCCCGAGAGTCCCCCTGACGGGAGGGAAGATGGCTGCACGGAGCTGGCAGGACGA GCTGGCCCACCAGGCCGAGGAGGGCTCGGCCCGGCTACGAGAAATGCTCTCGGTCGGCCT AAGCTTTCTGCGCACCGAGCTGGGCCTCGACCTGGGGCTGGAGCCGAAGCGGTACCCGGG CTGGGTGATCCTGGTGGGCACGGGCGCCCTCGGGCTGCTGCTGCTCTTCCTGCTCGGCTA CGGCTGGGCCGCGGCTTGCGCCGGCGCCCGCAAAAAGCGGAGGAGCCCGCCCCGCAAGCG GGAGGAGGCGGCGGCCTCGCCAGCCCCGGCCGCTGATGACCTAGCCCTGCTCAAGAATCT CAGGAACGAGGAGCAGAAGAAGAAGAACCGAAAGAAATTGCCCGAGAAGCCCAAACCAAA TGGACGGACTGTTGAAGTAGCCGAGGAGGAGGTCGTCCGAACTCCTCGAAACGTAACAGC AAAGCAGCCTCCAGAGACAGACAAGAAAAATGAAAAGTCAAAGAAAAATAAGAAGAAATC AAAGTCAGATGCTAAAGCAGTGCAAAACAGTTCACGCCATGATGGAAAGGAAGTTGATGA AGGAGCCTGGGAAACTAAAATTAGTCACAGAGAGAAACGACAGCAGCGTAAACGTGATAA GGTGCAGACTGATTCTGGTTCATTGGATTCAACTATCCCTGGGATAGAAAATATCATCAC AGTTACCACCGAGCAAGTTACAACTGCATCATTTCCTGTTGGTTCCAAGAAGAATAAAGG TGATTCTCATCTAAATGTTCAAGTTAGCAACTTTAAGTCTGGAAAAGGAGAGTCTACACT TCAGGTTTCTTCAGGATTGAATGAAAACCTCACTGTAAATGGAGGAGGCTGGAATGAAAA GTCTGTAAAACTTCCCTCACAGATCAGTGCAGGTGAGGAGAAGTGGAACTCTGTTTCACC TGCCTCTGCAGGCAAGAGGAAAACTGAGCCATCTGCTTGGGGTCAAGACACTGGAGAGGC TAATGCAAATGGAAAGGACTGGGGAAGGAGTTGGAGTGACCGTTCAATATTTTCTGGCAT TGGGTCTACTGCTGAGCCAGTTTCTCAGTCTACTACTTCTGATTATCAGTGGGATGCTAG CGGTAATCAACCCTATATCGATGATGAATGGTCTGGGTTAAATGGTCTGTCTTCTGCTGA TCCCAGCTCTGATTGGAACGCGCCAGCAGAGGAGTGGGGGAATTGGGTAGAGGAAGAAAG AGCTTCACTTCTAAAGTCCCAGGAACCAATTCCTGATGATCAAAAAGTTTCAGATGATGA TAAAGAAAAGGGAGAGGGAGCTCTTCCAACCGGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1019-1217, + strand, RNAz p=0.971647 | |
| 1055-1173, + strand, RNAz p=0.739338 | |
| 1358-1488, + strand, RNAz p=0.921904 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1019-1217, + strand, RNAz p=0.971647 | |
| 1055-1173, + strand, RNAz p=0.739338 | |
| 1358-1488, + strand, RNAz p=0.921904 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 5-595, gnl|bosTau2|chr14 (40131229-40130614) | |
| 5-595, gnl|Hg17|chr8 (98725695-98726291) | |
| 5-595, gnl|Mm7|chr15 (34191777-34192363) | |
| 596-697, gnl|bosTau2|chr14 (40115416-40115315) | |
| 596-697, gnl|canFam2|chr29 (44674001-44674216) | |
| 596-697, gnl|canFam2|chr29 (44674191-44674090) | |
| 596-697, gnl|echTel1|scaffold_248567 (3036-2845) | |
| 596-697, gnl|echTel1|scaffold_248567 (2869-2969) | |
| 596-697, gnl|galGal2|chr2 (126678908-126679107) | |
| 596-697, gnl|hg17|chr19 (21423454-21423555) | |
| 596-697, gnl|hg17|chr8 (98742386-98742601) | |
| 596-697, gnl|Hg17|chr8 (98742476-98742577) | |
| 596-697, gnl|loxAfr1|scaffold_9447 (14854-14634) | |
| 596-697, gnl|loxAfr1|scaffold_9447 (14658-14759) | |
| 596-697, gnl|mm7|chr15 (34208343-34208553) | |
| 596-697, gnl|Mm7|chr15 (34208434-34208535) | |
| 596-697, gnl|mm7|chr7 (10598904-10598805) | |
| 596-697, gnl|oryCun1|scaffold_172697 (13546-13758) | |
| 596-697, gnl|oryCun1|scaffold_174122 (24568-24657) | |
| 596-697, gnl|panTro1|chr20 (22412598-22412699) | |
| 596-697, gnl|panTro1|chr7 (101015768-101015983) | |
| 596-697, gnl|rheMac2|chr19 (20710915-20711015) | |
| 596-697, gnl|rheMac2|chr8 (100194092-100194307) | |
| 596-697, gnl|rn3|chr7 (69563945-69564151) | |
| 596-697, gnl|rn3|chrUn (30875446-30875341) | |
| 781-961, gnl|bosTau2|chr14 (40101099-40100919) | |
| 781-961, gnl|canFam2|chr29 (44689712-44689963) | |
| 781-961, gnl|echTel1|scaffold_282484 (24790-24542) | |
| 781-961, gnl|galGal2|chr2 (126684487-126684741) | |
| 781-961, gnl|hg17|chr8 (98768772-98769020) | |
| 781-961, gnl|Hg17|chr8 (98768831-98769011) | |
| 781-961, gnl|loxAfr1|scaffold_25561 (16058-15810) | |
| 781-961, gnl|mm7|chr15 (34223689-34223936) | |
| 781-961, gnl|Mm7|chr15 (34223747-34223927) | |
| 781-961, gnl|monDom2|scaffold_3 (67039159-67038909) | |
| 781-961, gnl|oryCun1|scaffold_172697 (34474-34724) | |
| 781-961, gnl|panTro1|chr7 (101044606-101044854) | |
| 781-961, gnl|rheMac2|chr8 (100217132-100217380) | |
| 781-961, gnl|rn3|chr7 (69576424-69576674) | |
| 1019-1263, gnl|bosTau2|chr14 (40097913-40097669) | |
| 1019-1263, gnl|canFam2|chr29 (44692841-44693180) | |
| 1019-1263, gnl|dasNov1|scaffold_22530 (5496-5154) | |
| 1019-1263, gnl|echTel1|scaffold_282484 (21365-21018) | |
| 1019-1263, gnl|galGal2|chr2 (126688252-126688588) | |
| 1019-1263, gnl|hg17|chr8 (98772346-98772687) | |
| 1019-1263, gnl|Hg17|chr8 (98772349-98772593) | |
| 1019-1263, gnl|mm7|chr15 (34226824-34227156) | |
| 1019-1263, gnl|Mm7|chr15 (34226824-34227061) | |
| 1019-1263, gnl|monDom2|scaffold_3 (67035707-67035352) | |
| 1019-1263, gnl|oryCun1|scaffold_172697 (37321-37667) | |
| 1019-1263, gnl|panTro1|chr7 (101048204-101048542) | |
| 1019-1263, gnl|rheMac2|chr8 (100220716-100221057) | |
| 1019-1263, gnl|rn3|chr7 (69579812-69580159) | |
| 1358-1488, gnl|bosTau2|chr14 (40086908-40086778) | |
| 1358-1488, gnl|canFam2|chr29 (44703204-44703339) | |
| 1358-1488, gnl|echTel1|scaffold_282484 (11379-11244) | |
| 1358-1488, gnl|galGal2|chr2 (126697746-126697883) | |
| 1358-1488, gnl|hg17|chr8 (98788025-98788160) | |
| 1358-1488, gnl|Hg17|chr8 (98788026-98788156) | |
| 1358-1488, gnl|mm7|chr15 (34240109-34240234) | |
| 1358-1488, gnl|Mm7|chr15 (34240110-34240240) | |
| 1358-1488, gnl|monDom2|scaffold_3 (67027626-67027494) | |
| 1358-1488, gnl|oryCun1|scaffold_172697 (48585-48720) | |
| 1358-1488, gnl|panTro1|chr7 (101064131-101064266) | |
| 1358-1488, gnl|rheMac2|chr8 (100236123-100236258) | |
| 1358-1488, gnl|rn3|chr7 (69593078-69593213) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-595, gnl|bosTau2|chr14 (40131229-40130614) | |
| 5-595, gnl|Hg17|chr8 (98725695-98726291) | |
| 5-595, gnl|Mm7|chr15 (34191777-34192363) | |
| 596-697, gnl|bosTau2|chr14 (40115416-40115315) | |
| 596-697, gnl|canFam2|chr29 (44674001-44674216) | |
| 596-697, gnl|canFam2|chr29 (44674191-44674090) | |
| 596-697, gnl|echTel1|scaffold_248567 (3036-2845) | |
| 596-697, gnl|echTel1|scaffold_248567 (2869-2969) | |
| 596-697, gnl|galGal2|chr2 (126678908-126679107) | |
| 596-697, gnl|hg17|chr19 (21423454-21423555) | |
| 596-697, gnl|hg17|chr8 (98742386-98742601) | |
| 596-697, gnl|Hg17|chr8 (98742476-98742577) | |
| 596-697, gnl|loxAfr1|scaffold_9447 (14854-14634) | |
| 596-697, gnl|loxAfr1|scaffold_9447 (14658-14759) | |
| 596-697, gnl|mm7|chr15 (34208343-34208553) | |
| 596-697, gnl|Mm7|chr15 (34208434-34208535) | |
| 596-697, gnl|mm7|chr7 (10598904-10598805) | |
| 596-697, gnl|oryCun1|scaffold_172697 (13546-13758) | |
| 596-697, gnl|oryCun1|scaffold_174122 (24568-24657) | |
| 596-697, gnl|panTro1|chr20 (22412598-22412699) | |
| 596-697, gnl|panTro1|chr7 (101015768-101015983) | |
| 596-697, gnl|rheMac2|chr19 (20710915-20711015) | |
| 596-697, gnl|rheMac2|chr8 (100194092-100194307) | |
| 596-697, gnl|rn3|chr7 (69563945-69564151) | |
| 596-697, gnl|rn3|chrUn (30875446-30875341) | |
| 781-961, gnl|bosTau2|chr14 (40101099-40100919) | |
| 781-961, gnl|canFam2|chr29 (44689712-44689963) | |
| 781-961, gnl|echTel1|scaffold_282484 (24790-24542) | |
| 781-961, gnl|galGal2|chr2 (126684487-126684741) | |
| 781-961, gnl|hg17|chr8 (98768772-98769020) | |
| 781-961, gnl|Hg17|chr8 (98768831-98769011) | |
| 781-961, gnl|loxAfr1|scaffold_25561 (16058-15810) | |
| 781-961, gnl|mm7|chr15 (34223689-34223936) | |
| 781-961, gnl|Mm7|chr15 (34223747-34223927) | |
| 781-961, gnl|monDom2|scaffold_3 (67039159-67038909) | |
| 781-961, gnl|oryCun1|scaffold_172697 (34474-34724) | |
| 781-961, gnl|panTro1|chr7 (101044606-101044854) | |
| 781-961, gnl|rheMac2|chr8 (100217132-100217380) | |
| 781-961, gnl|rn3|chr7 (69576424-69576674) | |
| 1019-1263, gnl|bosTau2|chr14 (40097913-40097669) | |
| 1019-1263, gnl|canFam2|chr29 (44692841-44693180) | |
| 1019-1263, gnl|dasNov1|scaffold_22530 (5496-5154) | |
| 1019-1263, gnl|echTel1|scaffold_282484 (21365-21018) | |
| 1019-1263, gnl|galGal2|chr2 (126688252-126688588) | |
| 1019-1263, gnl|hg17|chr8 (98772346-98772687) | |
| 1019-1263, gnl|Hg17|chr8 (98772349-98772593) | |
| 1019-1263, gnl|mm7|chr15 (34226824-34227156) | |
| 1019-1263, gnl|Mm7|chr15 (34226824-34227061) | |
| 1019-1263, gnl|monDom2|scaffold_3 (67035707-67035352) | |
| 1019-1263, gnl|oryCun1|scaffold_172697 (37321-37667) | |
| 1019-1263, gnl|panTro1|chr7 (101048204-101048542) | |
| 1019-1263, gnl|rheMac2|chr8 (100220716-100221057) | |
| 1019-1263, gnl|rn3|chr7 (69579812-69580159) | |
| 1358-1488, gnl|bosTau2|chr14 (40086908-40086778) | |
| 1358-1488, gnl|canFam2|chr29 (44703204-44703339) | |
| 1358-1488, gnl|echTel1|scaffold_282484 (11379-11244) | |
| 1358-1488, gnl|galGal2|chr2 (126697746-126697883) | |
| 1358-1488, gnl|hg17|chr8 (98788025-98788160) | |
| 1358-1488, gnl|Hg17|chr8 (98788026-98788156) | |
| 1358-1488, gnl|mm7|chr15 (34240109-34240234) | |
| 1358-1488, gnl|Mm7|chr15 (34240110-34240240) | |
| 1358-1488, gnl|monDom2|scaffold_3 (67027626-67027494) | |
| 1358-1488, gnl|oryCun1|scaffold_172697 (48585-48720) | |
| 1358-1488, gnl|panTro1|chr7 (101064131-101064266) | |
| 1358-1488, gnl|rheMac2|chr8 (100236123-100236258) | |
| 1358-1488, gnl|rn3|chr7 (69593078-69593213) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| lun (0.601956) | |
| amn (0.417711) | |
| cje (0.330469) | |
| sme (0.305437) | |
| tes (0.207814) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.601956) | |
| amn (0.417711) | |
| cje (0.330469) | |
| sme (0.305437) | |
| tes (0.207814) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) |