Non-Coding RNA Search

Ss1.1-Ova1-OVRM10211E11.5

Sequence:


               
               AAAGGTAAATTAAGTACCAGATTTATTCAGGAATCCCCATTCCAAATTGTGCGACTGAAT
AAAACACCACGTTACAGTACAGAATGTCGTGTTTCCTTTGTGATTTCTAGTAATGAGCAT
GCTTTCTAGAAGGTGCCAGAATTAAGCAGGGGGAGCCCTATTTACACTAGATAGGAGGTT
CTGGCCCTGCCAGAAATGGTAAATTTGTTTCCACAGCAACCGTTTCTGCAGCCCAGAGTC
TCAGGGCCCCAGAGGCAGTGGCTTAATTGGCTTCCCACAGAATACTCTGGACTGCGGTTT
TGGCTTTGCTCTCTTGGGAATGTGTGTTTATTAGCACATGCCAACAAAAGAAATGTCAAA
GATTACTTAATAGCAATGATAAGGAAAAGTCAAGCATGAAGAAACTTGATGGTATGATTG
TAAGAATTAGAGCAAAGGCTTGTCCTTTTCACCAGCATTTTCTTTTTTTTGCTTCGTAGG
GCCGCACCCACTCCATATAGAGGTTCCCAGGCTATAGGAGTCAAACTGCAGCTGTAGCTG
CTGACCTGCGCCACAACCACAGCAACATCAGATCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGTAAATTAAGTACCAGATTTATTCAGGAATCCCCATTCCAAATTGTGCGACTGAAT
AAAACACCACGTTACAGTACAGAATGTCGTGTTTCCTTTGTGATTTCTAGTAATGAGCAT
GCTTTCTAGAAGGTGCCAGAATTAAGCAGGGGGAGCCCTATTTACACTAGATAGGAGGTT
CTGGCCCTGCCAGAAATGGTAAATTTGTTTCCACAGCAACCGTTTCTGCAGCCCAGAGTC
TCAGGGCCCCAGAGGCAGTGGCTTAATTGGCTTCCCACAGAATACTCTGGACTGCGGTTT
TGGCTTTGCTCTCTTGGGAATGTGTGTTTATTAGCACATGCCAACAAAAGAAATGTCAAA
GATTACTTAATAGCAATGATAAGGAAAAGTCAAGCATGAAGAAACTTGATGGTATGATTG
TAAGAATTAGAGCAAAGGCTTGTCCTTTTCACCAGCATTTTCTTTTTTTTGCTTCGTAGG
GCCGCACCCACTCCATATAGAGGTTCCCAGGCTATAGGAGTCAAACTGCAGCTGTAGCTG
CTGACCTGCGCCACAACCACAGCAACATCAGATCCG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-469, gnl|bosTau2|chr6 (19321040-19321355)
               

               
               168-469, gnl|Hg17|chr4 (90004553-90004269)
               

               
               168-469, gnl|Mm7|chr6 (58901930-58901654)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-469, gnl|bosTau2|chr6 (19321040-19321355)
               

               
               168-469, gnl|Hg17|chr4 (90004553-90004269)
               

               
               168-469, gnl|Mm7|chr6 (58901930-58901654)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	168-469, gnl\|bosTau2\|chr6 (19321040-19321355)
	168-469, gnl\|Hg17\|chr4 (90004553-90004269)
	168-469, gnl\|Mm7\|chr6 (58901930-58901654)