Non-Coding RNA Search

Ss1.1-Ova1-OVRM10211F12.5

Sequence:


               
               CCAGGTGAAGGGTCTCTAAGCTCTAGAGGAGGGCTTTACACTGCCATGGCTTCTCTGGCC
AGCAGGTCCTGTCCAGCCACAGCTGATCCCTGGAAATAGGCCAGCGTGCCCTGTCTGTCT
CCCAGGCCACATCCAGCCCTTGCCTGTGCTCACTGTGCCCCAAAGTGCAATTAGCTACAC
CCCTTCTGAGCCTGGGGACACCGAGCAGCTACAGACTGTCCACTCAGGAGAGCTCAATTC
CAGGTCAGCCCCACCTGGGGGATCTGCCCAGGCAAGGTCCCTTGTCCCTGCCCACTTCTC
ACGGAGGATGAGTGGTCAGGGAAAGACGGATAGATTTTTTAAGTGGGAATCCTTCCCCTT
CCCCCCAGCGGAACCCCTTGATGCTGGGCTTGAAAAGCACCGAGGCTTCCTGTAGAGAGG
AATGTGCGTGGGTGCGGCTGGCTCCTGGGCTGCCCGCTCGCTGTGGCTGGCGCCACCTGT
GGCAGAGGTGCCTTTATAACCATGACTGTTGTGTTGATCCCATGCCCAGCCAGACTCTCA
CGGAAAACCCTCACCTCTTTTCAAGAAGAACCTATACCATCTCACCACCTCTGGCACAAC
TCCTGAAAGTGTCTGCCTGTGGACAGTCTGTCCTGTGACCTTCTCTTCTTTCCTGGGATG
GTACATGGCTACTCCCTTGCCTTTCTCATTTCTCAAAGGTGCTGTGGAGCACCTCTGACC
CCATACTTAGTTCCAGAGCTAATCTCTCCTGCACAGGGACTAACAGGGAAGTGCGAAGCC
CTGGTGAGGTTGTGCTGTGCTGTCCTCTAGCGGGGGTTGAGGCTCTGCTAGGCCTTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTGAAGGGTCTCTAAGCTCTAGAGGAGGGCTTTACACTGCCATGGCTTCTCTGGCC
AGCAGGTCCTGTCCAGCCACAGCTGATCCCTGGAAATAGGCCAGCGTGCCCTGTCTGTCT
CCCAGGCCACATCCAGCCCTTGCCTGTGCTCACTGTGCCCCAAAGTGCAATTAGCTACAC
CCCTTCTGAGCCTGGGGACACCGAGCAGCTACAGACTGTCCACTCAGGAGAGCTCAATTC
CAGGTCAGCCCCACCTGGGGGATCTGCCCAGGCAAGGTCCCTTGTCCCTGCCCACTTCTC
ACGGAGGATGAGTGGTCAGGGAAAGACGGATAGATTTTTTAAGTGGGAATCCTTCCCCTT
CCCCCCAGCGGAACCCCTTGATGCTGGGCTTGAAAAGCACCGAGGCTTCCTGTAGAGAGG
AATGTGCGTGGGTGCGGCTGGCTCCTGGGCTGCCCGCTCGCTGTGGCTGGCGCCACCTGT
GGCAGAGGTGCCTTTATAACCATGACTGTTGTGTTGATCCCATGCCCAGCCAGACTCTCA
CGGAAAACCCTCACCTCTTTTCAAGAAGAACCTATACCATCTCACCACCTCTGGCACAAC
TCCTGAAAGTGTCTGCCTGTGGACAGTCTGTCCTGTGACCTTCTCTTCTTTCCTGGGATG
GTACATGGCTACTCCCTTGCCTTTCTCATTTCTCAAAGGTGCTGTGGAGCACCTCTGACC
CCATACTTAGTTCCAGAGCTAATCTCTCCTGCACAGGGACTAACAGGGAAGTGCGAAGCC
CTGGTGAGGTTGTGCTGTGCTGTCCTCTAGCGGGGGTTGAGGCTCTGCTAGGCCTTCCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               28-122, - strand, RNAz p=0.813475
               

               
               383-498, + strand, RNAz p=0.748491

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-122, - strand, RNAz p=0.813475
               

               
               383-498, + strand, RNAz p=0.748491

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               263-481, - strand, RNAmicro p=0.970359

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               263-481, - strand, RNAmicro p=0.970359

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               28-840, gnl|bosTau2|chr28 (34262293-34261509)
               

               
               28-840, gnl|Hg17|chr10 (45271961-45271063)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-840, gnl|bosTau2|chr28 (34262293-34261509)
               

               
               28-840, gnl|Hg17|chr10 (45271961-45271063)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               eli (0.151814)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               eli (0.151814)

	28-122, - strand, RNAz p=0.813475
	383-498, + strand, RNAz p=0.748491

	28-840, gnl\|bosTau2\|chr28 (34262293-34261509)
	28-840, gnl\|Hg17\|chr10 (45271961-45271063)