Non-Coding RNA Search

Ss1.1-Ova1-OVRM10211G02.5

Sequence:


               
               TTAGGGGTTGCAGCATTTTTCGGCCTCTTTATTTAGAACCCGGCGGACGAGGAGCCGGGG
CAGTGGTGCAGACGGCTCAGGAACCATTTTTTTTTTTTTTTAACAGATTTGTCTTCAAGT
TTAAAATAATCATAATAATAAAAAGAGACAGCGAAAGCGCGAAGAGACTGCAAGCTAGAT
GGGCTTGTACGGCAGCTACAGCTTGGGAGCGACCCTCCCCCCAGAGTCCGCTACAAAAAT
AAATTTACATTTGTCGATAACCAGATGCGGGTGACGTGCCTTTGGCATAACCAATAACCG
AGCTATTGCGTGGCAGAGCGGCCCACGCCTCGACATAAATAGAAAATATAAGTTAGTATA
ACTTTAAAAACTTTTTGTACAAATATACATGTTTTTTTCTTTTTTCCTTTTTTTTGTTTT
TCTTTTTTTTTCTTTTTTTTTTTTGCACTGAGTTTCAGCAGAGATTAAACATTTTATATA
AATGACTCTTAAAGCTTTACACCTTGGGACCAGTGTACTCCTCGTGCAGAATACATTTAG
ATATAAAAGACGTTATTAATACATTGCACAGTTTTCAAACTTTAAACAAAACCGAACGCT
GCTCCGTGGCAGCTGCCGCCGGTTGCTGCTACGTGGACGGTCCCAGCCGAGGCCCAGCGC
TCCTCTCCTGTCCGCTGCCCAGCGGGCTCCCTCGGGGCTCTTTGGGCGCGAGGCTCTCAT
CGCAGCCGCTTGCGCGGGGTTTGCTCAGCCGAGCCGACGGCTGGAGCGGCGCCAGGCGCG
GCGCATCCCGCGGGAACCTCGTTCGACGCCTTGGCCTCGGGCGCGGGTCTCTTGCGCTTG
GCGAAGAAATCGGAGATGAGAGGCCCGGACAGCTTCTTGATCGCGGCGCCTCCGGCGGCG
GCAGTGGTGGCAGCGGCGGCGGCGGCAGTGGCGGCGGCGGCGGCGGCGGCGGCAGCGGTG
TTGGCAGTGGCGGCAGTGCCCGGCGCGGGGCGCCCCGAAATCCCTGAGTGCGGCGGCTCG
GCTAGGGGCTCCTGGCTGCGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGGGTTGCAGCATTTTTCGGCCTCTTTATTTAGAACCCGGCGGACGAGGAGCCGGGG
CAGTGGTGCAGACGGCTCAGGAACCATTTTTTTTTTTTTTTAACAGATTTGTCTTCAAGT
TTAAAATAATCATAATAATAAAAAGAGACAGCGAAAGCGCGAAGAGACTGCAAGCTAGAT
GGGCTTGTACGGCAGCTACAGCTTGGGAGCGACCCTCCCCCCAGAGTCCGCTACAAAAAT
AAATTTACATTTGTCGATAACCAGATGCGGGTGACGTGCCTTTGGCATAACCAATAACCG
AGCTATTGCGTGGCAGAGCGGCCCACGCCTCGACATAAATAGAAAATATAAGTTAGTATA
ACTTTAAAAACTTTTTGTACAAATATACATGTTTTTTTCTTTTTTCCTTTTTTTTGTTTT
TCTTTTTTTTTCTTTTTTTTTTTTGCACTGAGTTTCAGCAGAGATTAAACATTTTATATA
AATGACTCTTAAAGCTTTACACCTTGGGACCAGTGTACTCCTCGTGCAGAATACATTTAG
ATATAAAAGACGTTATTAATACATTGCACAGTTTTCAAACTTTAAACAAAACCGAACGCT
GCTCCGTGGCAGCTGCCGCCGGTTGCTGCTACGTGGACGGTCCCAGCCGAGGCCCAGCGC
TCCTCTCCTGTCCGCTGCCCAGCGGGCTCCCTCGGGGCTCTTTGGGCGCGAGGCTCTCAT
CGCAGCCGCTTGCGCGGGGTTTGCTCAGCCGAGCCGACGGCTGGAGCGGCGCCAGGCGCG
GCGCATCCCGCGGGAACCTCGTTCGACGCCTTGGCCTCGGGCGCGGGTCTCTTGCGCTTG
GCGAAGAAATCGGAGATGAGAGGCCCGGACAGCTTCTTGATCGCGGCGCCTCCGGCGGCG
GCAGTGGTGGCAGCGGCGGCGGCGGCAGTGGCGGCGGCGGCGGCGGCGGCGGCAGCGGTG
TTGGCAGTGGCGGCAGTGCCCGGCGCGGGGCGCCCCGAAATCCCTGAGTGCGGCGGCTCG
GCTAGGGGCTCCTGGCTGCGCGGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               8-715, gnl|bosTau2|chr29 (43717413-43718110)
               

               
               8-715, gnl|Hg17|chr11 (2861024-2861723)
               

               
               8-715, gnl|Mm7|chr7 (139885628-139886296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-715, gnl|bosTau2|chr29 (43717413-43718110)
               

               
               8-715, gnl|Hg17|chr11 (2861024-2861723)
               

               
               8-715, gnl|Mm7|chr7 (139885628-139886296)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               nms (0.427716)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               eje (0.296501)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eru (0.120048)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               eje (0.296501)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eru (0.120048)

	8-715, gnl\|bosTau2\|chr29 (43717413-43718110)
	8-715, gnl\|Hg17\|chr11 (2861024-2861723)
	8-715, gnl\|Mm7\|chr7 (139885628-139886296)

	nms (0.427716)
	pla (0.401016)
	elu (0.385356)
	eje (0.296501)
	nep (0.183925)
	mgm (0.180343)
	pty (0.142714)
	ute (0.132784)
	eru (0.120048)