Ss1.1-Ova1-OVRM10212B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTCCGGCGCGGAGCAGCGGGTTGGGCTGTGTATGAGGCCGGGTTCGGGGACTGGACCA GTAGTGGCCAAACCTGGCCAAGAGCGCGGCTGCCGGAACGCTCGCAGTCGGCGTCTCGGC CTCAGCGGAGGGTGCGGCCGCCGCAATGCCGTTCCTGCACGGCTTCCGGAGGATCATCTT CGAGTACCAGCCGCTGGTGGACGCGATTCTGGGCTCCTTGGGGATCCAGGACCCTGAGCG GCAGGAACCCCTGGACGGACCCAGTTATGTCGCGAGTGAGGAGAGCCGGATCCTTGTTCT CACTGAGCTGCTGGAGAGAAAGGCCCACTCTCCCTTCTACCAGGAAGGCGTGAGCAACGC CCTGCTGAAGATGGCCGAGCTGGGGCTGACCCGTGCCGCTGACGTTCTCCTGCGGAATGG AGCCAACCTCAACTTTGAAGACCCGGTCACCTACTACACGGCTCTGCACATCGCCGTCCT GCGAAACCAGCCTGACATGGTGGAGCTGCTGGTGCGCCACGGGGCCGACATTAACCGGAG GGACCGGATCCATGAGAGCAGCCCCTTGGACCTGGCCAGCGAGGAGCCCGAGCGCTTGCC CTGCCTGCAGCGCCTCCTGGACCTCGGCGCAGACGTCAACGCGGCCGACAAGCACGGGAA GACGGCCCTGCTCCACGCTCTGGCCAGCAGCGACGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTCCGGCGCGGAGCAGCGGGTTGGGCTGTGTATGAGGCCGGGTTCGGGGACTGGACCA GTAGTGGCCAAACCTGGCCAAGAGCGCGGCTGCCGGAACGCTCGCAGTCGGCGTCTCGGC CTCAGCGGAGGGTGCGGCCGCCGCAATGCCGTTCCTGCACGGCTTCCGGAGGATCATCTT CGAGTACCAGCCGCTGGTGGACGCGATTCTGGGCTCCTTGGGGATCCAGGACCCTGAGCG GCAGGAACCCCTGGACGGACCCAGTTATGTCGCGAGTGAGGAGAGCCGGATCCTTGTTCT CACTGAGCTGCTGGAGAGAAAGGCCCACTCTCCCTTCTACCAGGAAGGCGTGAGCAACGC CCTGCTGAAGATGGCCGAGCTGGGGCTGACCCGTGCCGCTGACGTTCTCCTGCGGAATGG AGCCAACCTCAACTTTGAAGACCCGGTCACCTACTACACGGCTCTGCACATCGCCGTCCT GCGAAACCAGCCTGACATGGTGGAGCTGCTGGTGCGCCACGGGGCCGACATTAACCGGAG GGACCGGATCCATGAGAGCAGCCCCTTGGACCTGGCCAGCGAGGAGCCCGAGCGCTTGCC CTGCCTGCAGCGCCTCCTGGACCTCGGCGCAGACGTCAACGCGGCCGACAAGCACGGGAA GACGGCCCTGCTCCACGCTCTGGCCAGCAGCGACGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 142-243, - strand, RNAz p=0.663275 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 142-243, - strand, RNAz p=0.663275 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-258, gnl|bosTau2|chr11 (79418049-79417783) | |
| 1-258, gnl|Hg17|chr9 (129483999-129483720) | |
| 1-258, gnl|Mm7|chr2 (30835605-30835385) | |
| 260-440, gnl|bosTau2|chr11 (79416728-79416548) | |
| 260-440, gnl|Hg17|chr9 (129482554-129482374) | |
| 260-440, gnl|Mm7|chr2 (30834414-30834234) | |
| 547-657, gnl|bosTau2|chr11 (79415567-79415457) | |
| 547-657, gnl|canFam2|chr9 (57505849-57505712) | |
| 547-657, gnl|danRer3|chr8 (1365110-1364981) | |
| 547-657, gnl|dasNov1|scaffold_91277 (3991-4129) | |
| 547-657, gnl|echTel1|scaffold_298049 (911-774) | |
| 547-657, gnl|fr1|chrUn (47461406-47461530) | |
| 547-657, gnl|galGal2|chr17 (5223943-5223818) | |
| 547-657, gnl|hg17|chr9 (129481033-129481170) | |
| 547-657, gnl|Hg17|chr9 (129481144-129481034) | |
| 547-657, gnl|loxAfr1|scaffold_83146 (8047-7937) | |
| 547-657, gnl|mm7|chr2 (30832762-30832900) | |
| 547-657, gnl|Mm7|chr2 (30832872-30832762) | |
| 547-657, gnl|monDom2|scaffold_51 (4571659-4571796) | |
| 547-657, gnl|oryCun1|scaffold_150524 (5281-5348) | |
| 547-657, gnl|panTro1|chr11 (114341891-114342028) | |
| 547-657, gnl|rheMac2|chr15 (9200627-9200490) | |
| 547-657, gnl|rn3|chr3 (9774703-9774842) | |
| 547-657, gnl|tetNig1|chrUn_random (33778087-33777949) | |
| 547-657, gnl|xenTro1|scaffold_810 (478026-478140) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-258, gnl|bosTau2|chr11 (79418049-79417783) | |
| 1-258, gnl|Hg17|chr9 (129483999-129483720) | |
| 1-258, gnl|Mm7|chr2 (30835605-30835385) | |
| 260-440, gnl|bosTau2|chr11 (79416728-79416548) | |
| 260-440, gnl|Hg17|chr9 (129482554-129482374) | |
| 260-440, gnl|Mm7|chr2 (30834414-30834234) | |
| 547-657, gnl|bosTau2|chr11 (79415567-79415457) | |
| 547-657, gnl|canFam2|chr9 (57505849-57505712) | |
| 547-657, gnl|danRer3|chr8 (1365110-1364981) | |
| 547-657, gnl|dasNov1|scaffold_91277 (3991-4129) | |
| 547-657, gnl|echTel1|scaffold_298049 (911-774) | |
| 547-657, gnl|fr1|chrUn (47461406-47461530) | |
| 547-657, gnl|galGal2|chr17 (5223943-5223818) | |
| 547-657, gnl|hg17|chr9 (129481033-129481170) | |
| 547-657, gnl|Hg17|chr9 (129481144-129481034) | |
| 547-657, gnl|loxAfr1|scaffold_83146 (8047-7937) | |
| 547-657, gnl|mm7|chr2 (30832762-30832900) | |
| 547-657, gnl|Mm7|chr2 (30832872-30832762) | |
| 547-657, gnl|monDom2|scaffold_51 (4571659-4571796) | |
| 547-657, gnl|oryCun1|scaffold_150524 (5281-5348) | |
| 547-657, gnl|panTro1|chr11 (114341891-114342028) | |
| 547-657, gnl|rheMac2|chr15 (9200627-9200490) | |
| 547-657, gnl|rn3|chr3 (9774703-9774842) | |
| 547-657, gnl|tetNig1|chrUn_random (33778087-33777949) | |
| 547-657, gnl|xenTro1|scaffold_810 (478026-478140) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cty (0.10408) |