Non-Coding RNA Search

Ss1.1-Ova1-OVRM10212B11.5

Sequence:


               
               AGTAAGATGGAAGATGAGGAGGTCGCTGAGAGCTGGGAGGAGGCGGCAGACAGCGGGCAG
GAAATCCAAATCTCCTCCCAAAGTGCCCATTGTGATTCAGGACGATAGCCTTCCCACGGG
GCCCCCTCCACAGATCCGCATCCTCAAGAGGCCCACCAGCAACGGTGTGGTCAGCAGCCC
CAACTCCACCAGCAGGCCAGCCCTTCCCGTCAAGTCCCTAGCACAGCGGGAGGCAGAATA
CGCGGAGGCCAGGAAGCGGATCCTGGGCAGTGCCAGCCCCGAGGAGGAGCAAGAGAAACC
CATCCTCGACAGGCCAACCAGGATCTCCCAACCTGAAGACAGCAGGCAGCCCAACAATGT
GATCAGACAGCCTTTGGGTCCTGATGGGTCACAAGGCTTCAAACAGCGCAGATAAATGCG
GGCTGGAAAGGATGCCGCCGCCATCACCACCTCCTGGGTCGTCCGCTGCGGGTCGCACTG
CCGTGGCAGACAGCTGGACTTGAGCAGAGGGAACGACCTGACTTACTTGCACTGTGATCC
CCTTTGCTCCGCCCACTGTGACCTTGAACCCCATGCACTGTGACCTCCCTCCCCCCCCCT
TCCCACTGTGATTGGCATGTCTACAAGGGCTGTCCCAAGTCAATGGAAAGGGAAAGGGTG
GGGGTTAGAGGAGGGTTGAGGGGACCCACCAAGGACTCAGAGAGTCAGACAGTGCCACTT
GGCCACTTGGGGTAAAGCCAGTGCCAGCAATAACAGTTTATCATGCTCATTAATTTTGAA
TTTCAAACACAAATGAGAACTCCCATCCACCCACCCTCAAGTGCATGTCTTCATCACTTA
AAAGCAAGTTCCATTTGAAAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAAGATGGAAGATGAGGAGGTCGCTGAGAGCTGGGAGGAGGCGGCAGACAGCGGGCAG
GAAATCCAAATCTCCTCCCAAAGTGCCCATTGTGATTCAGGACGATAGCCTTCCCACGGG
GCCCCCTCCACAGATCCGCATCCTCAAGAGGCCCACCAGCAACGGTGTGGTCAGCAGCCC
CAACTCCACCAGCAGGCCAGCCCTTCCCGTCAAGTCCCTAGCACAGCGGGAGGCAGAATA
CGCGGAGGCCAGGAAGCGGATCCTGGGCAGTGCCAGCCCCGAGGAGGAGCAAGAGAAACC
CATCCTCGACAGGCCAACCAGGATCTCCCAACCTGAAGACAGCAGGCAGCCCAACAATGT
GATCAGACAGCCTTTGGGTCCTGATGGGTCACAAGGCTTCAAACAGCGCAGATAAATGCG
GGCTGGAAAGGATGCCGCCGCCATCACCACCTCCTGGGTCGTCCGCTGCGGGTCGCACTG
CCGTGGCAGACAGCTGGACTTGAGCAGAGGGAACGACCTGACTTACTTGCACTGTGATCC
CCTTTGCTCCGCCCACTGTGACCTTGAACCCCATGCACTGTGACCTCCCTCCCCCCCCCT
TCCCACTGTGATTGGCATGTCTACAAGGGCTGTCCCAAGTCAATGGAAAGGGAAAGGGTG
GGGGTTAGAGGAGGGTTGAGGGGACCCACCAAGGACTCAGAGAGTCAGACAGTGCCACTT
GGCCACTTGGGGTAAAGCCAGTGCCAGCAATAACAGTTTATCATGCTCATTAATTTTGAA
TTTCAAACACAAATGAGAACTCCCATCCACCCACCCTCAAGTGCATGTCTTCATCACTTA
AAAGCAAGTTCCATTTGAAAATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33239391|ref|NP_778161.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33239391|ref|NP_778161.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               583-735, + strand, RNAz p=0.986866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               583-735, + strand, RNAz p=0.986866

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR624498, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR624498, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               310-864, gnl|bosTau2|chr2 (85964888-85964355)
               

               
               310-864, gnl|Hg17|chr1 (16466836-16467400)
               

               
               310-864, gnl|Mm7|chr4 (140494308-140493753)
               


               
               659-857, gnl|bosTau2|chr17 (5396945-5397158)
               

               
               659-857, gnl|Hg17|chr1 (16467194-16467393)
               

               
               659-857, gnl|Mm7|chr4 (140493955-140493761)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               310-864, gnl|bosTau2|chr2 (85964888-85964355)
               

               
               310-864, gnl|Hg17|chr1 (16466836-16467400)
               

               
               310-864, gnl|Mm7|chr4 (140494308-140493753)
               


               
               659-857, gnl|bosTau2|chr17 (5396945-5397158)
               

               
               659-857, gnl|Hg17|chr1 (16467194-16467393)
               

               
               659-857, gnl|Mm7|chr4 (140493955-140493761)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               jca (0.11396)

	310-864, gnl\|bosTau2\|chr2 (85964888-85964355)
	310-864, gnl\|Hg17\|chr1 (16466836-16467400)
	310-864, gnl\|Mm7\|chr4 (140494308-140493753)

	659-857, gnl\|bosTau2\|chr17 (5396945-5397158)
	659-857, gnl\|Hg17\|chr1 (16467194-16467393)
	659-857, gnl\|Mm7\|chr4 (140493955-140493761)