Non-Coding RNA Search

Ss1.1-Ova1-OVRM10212F11.5

Sequence:


               
               CTGCCGCAGCTTCCTCGCTTGGCCCATATGGTGGAGCCCAGCCCTCGGCCTCGGCCCTCT
CCTCCTATGGGGGTCAGCCAGCTGCGGCTTCTTCGCTCAACTCCTACGGGGCTCAGGACT
CCTCCCTTGCCTCCTATGGTAACCAGCCATCCTCTTATGGGGCGCAGGCTGCCTCTTCCT
ATGGGGTTCGTGCTGCTGCCTCCTCCTACAACACCCAGGGAGCAGCTTCCTCCCTAGGCT
CCTATGGGGCCCAGGCAGCCTCCTATGGGGCTCAGTCTGCAGCCTCTTCACTAGCTTATG
GGGCCCAGGCGGCTTCTTACAATGCCCAGCCTTCGGCCTCTTATAATGCCCAGTCTGCCC
CATATGCTGCACAGCAGGCTGCTTCCTACTCTTCTCAACCTGCTGCCTATGTGGCACAAC
CAGCTACAGCTGCTGCTTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCC
CGATGGCTGGCTCCTATGGGGCCCAGCCAGTAGTTCAGACCCAGCTGAATAGTTATGGGG
CTCAAGCATCAATGGGCCTGTCAGGCTCCTATGGGGCTCAGTCAGCCGCTGCGGCCACTG
GCTCCTATGGCGCCGCAGCTGCTTACGGGGCCCAACCTTCTGCCACCCTGGCAGCTCCTT
ACCGCACTCAGTCGTCAGCCTCATTGGCTGCTTCCTATGCTGCACAGCAGCATCCCCAGG
CTGCTGCCTCCTACCGTGGCCAGCCAGGCAATGCCTACGATGGGGCAGGTCAGCCGTCTG
CAACCTATCTGTCCATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCT
ATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGCAGCTTCCTCGCTTGGCCCATATGGTGGAGCCCAGCCCTCGGCCTCGGCCCTCT
CCTCCTATGGGGGTCAGCCAGCTGCGGCTTCTTCGCTCAACTCCTACGGGGCTCAGGACT
CCTCCCTTGCCTCCTATGGTAACCAGCCATCCTCTTATGGGGCGCAGGCTGCCTCTTCCT
ATGGGGTTCGTGCTGCTGCCTCCTCCTACAACACCCAGGGAGCAGCTTCCTCCCTAGGCT
CCTATGGGGCCCAGGCAGCCTCCTATGGGGCTCAGTCTGCAGCCTCTTCACTAGCTTATG
GGGCCCAGGCGGCTTCTTACAATGCCCAGCCTTCGGCCTCTTATAATGCCCAGTCTGCCC
CATATGCTGCACAGCAGGCTGCTTCCTACTCTTCTCAACCTGCTGCCTATGTGGCACAAC
CAGCTACAGCTGCTGCTTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCC
CGATGGCTGGCTCCTATGGGGCCCAGCCAGTAGTTCAGACCCAGCTGAATAGTTATGGGG
CTCAAGCATCAATGGGCCTGTCAGGCTCCTATGGGGCTCAGTCAGCCGCTGCGGCCACTG
GCTCCTATGGCGCCGCAGCTGCTTACGGGGCCCAACCTTCTGCCACCCTGGCAGCTCCTT
ACCGCACTCAGTCGTCAGCCTCATTGGCTGCTTCCTATGCTGCACAGCAGCATCCCCAGG
CTGCTGCCTCCTACCGTGGCCAGCCAGGCAATGCCTACGATGGGGCAGGTCAGCCGTCTG
CAACCTATCTGTCCATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCT
ATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q920B2_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q920B2_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-801, + strand, RNAz p=0.995933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-801, + strand, RNAz p=0.995933

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               398-505, - strand, RNAmicro p=0.999949
               

               
               217-364, + strand, RNAmicro p=0.96339

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               398-505, - strand, RNAmicro p=0.999949
               

               
               217-364, + strand, RNAmicro p=0.96339

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               3-755, BP460308 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP460308.1|), blast E-value=0, identity=99.73% 
               

               
               31-782, 602976666F1 NIH_MGC_12 Homo sapiens cDNA clone IMAGE (gb|BI254362.1|), 
blast E-value=0, identity=93.35% 
               

               
               21-801, AGENCOURT_6598488 NIH_MGC_41 Homo sapiens cDNA clone IMAGE 
(gb|BM558996.1|), blast E-value=0, identity=93.47% 
               

               
               21-801, AGENCOURT_6598271 NIH_MGC_41 Homo sapiens cDNA clone IMAGE 
(gb|BM559207.1|), blast E-value=0, identity=93.1% 
               

               
               65-801, AGENCOURT_6457299 NIH_MGC_88 Homo sapiens cDNA clone IMAGE 
(gb|BM802873.1|), blast E-value=0, identity=93.62% 
               

               
               16-801, LB02817.CR_N14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910516.1|), 
blast E-value=0, identity=95.17%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               3-755, BP460308 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP460308.1|), blast E-value=0, identity=99.73% 
               

               
               31-782, 602976666F1 NIH_MGC_12 Homo sapiens cDNA clone IMAGE (gb|BI254362.1|), 
blast E-value=0, identity=93.35% 
               

               
               21-801, AGENCOURT_6598488 NIH_MGC_41 Homo sapiens cDNA clone IMAGE 
(gb|BM558996.1|), blast E-value=0, identity=93.47% 
               

               
               21-801, AGENCOURT_6598271 NIH_MGC_41 Homo sapiens cDNA clone IMAGE 
(gb|BM559207.1|), blast E-value=0, identity=93.1% 
               

               
               65-801, AGENCOURT_6457299 NIH_MGC_88 Homo sapiens cDNA clone IMAGE 
(gb|BM802873.1|), blast E-value=0, identity=93.62% 
               

               
               16-801, LB02817.CR_N14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910516.1|), 
blast E-value=0, identity=95.17%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-900, gnl|bosTau2|chr29 (36876459-36875562)
               

               
               3-900, gnl|Hg17|chr11 (66148812-66149709)
               

               
               3-900, gnl|Mm7|chr19 (4698270-4697373)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-900, gnl|bosTau2|chr29 (36876459-36875562)
               

               
               3-900, gnl|Hg17|chr11 (66148812-66149709)
               

               
               3-900, gnl|Mm7|chr19 (4698270-4697373)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               csp (0.161186)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               csp (0.161186)
               

               
               med (0.116252)

	398-505, - strand, RNAmicro p=0.999949
	217-364, + strand, RNAmicro p=0.96339

	3-755, BP460308 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP460308.1\|), blast E-value=0, identity=99.73%
	31-782, 602976666F1 NIH_MGC_12 Homo sapiens cDNA clone IMAGE (gb\|BI254362.1\|), blast E-value=0, identity=93.35%
	21-801, AGENCOURT_6598488 NIH_MGC_41 Homo sapiens cDNA clone IMAGE (gb\|BM558996.1\|), blast E-value=0, identity=93.47%
	21-801, AGENCOURT_6598271 NIH_MGC_41 Homo sapiens cDNA clone IMAGE (gb\|BM559207.1\|), blast E-value=0, identity=93.1%
	65-801, AGENCOURT_6457299 NIH_MGC_88 Homo sapiens cDNA clone IMAGE (gb\|BM802873.1\|), blast E-value=0, identity=93.62%
	16-801, LB02817.CR_N14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV910516.1\|), blast E-value=0, identity=95.17%

	3-900, gnl\|bosTau2\|chr29 (36876459-36875562)
	3-900, gnl\|Hg17\|chr11 (66148812-66149709)
	3-900, gnl\|Mm7\|chr19 (4698270-4697373)