Non-Coding RNA Search

Ss1.1-Ova1-OVRM10212G07.5

Sequence:


               
               TTTGAAATGAAGGAAAAAGAAAAGAGGAAACTATTGGCATCACCCCCCTCCAGGTGATGG
GGGTGCTGGAGGCTGCAGGTACAATGAGGAGAGGCCTGGGGAGCAGGTGTGACTGGTCAC
TCTGCTAAGGCCTGAGCCAGAGTGGGATGACCAGGCCCAGCCCAAGTCAACTTCAGCTGC
TCATCCCCACCTCTCCCATGCCCCCTAACTTGCCCCTCATCCCAGAGGGTTTGGGGAGAA
GTTGGGGTGCCAGCGGCCCCTTTTGAAGGAGTTGTGGACCCAGTATGAGTGCTGCCAGAT
ATTGATCAAGGACTTGAGCCTGAATGCCAGGAATGCATTGGGCAGGCACAGCAAGGTGTG
AAGACCACAGATGCAGCTGTGCACTGTGGGGAGTGAGGCGGGCAGGGGCTGGACCCCAGG
CGTTTGCTTTTCCCACTCACGACCCCGCTGGCAGGCGCAGGGATCCTCGACCTGCACCAG
GCTGCACTGAAGGCTGGGTCCTGAAGAAAATGTCCCCAGAAACTGCTGGGCCTCAGGGTG
TGTGAGTCAGGCCCCGGGTGGGCAGACGGGCTAGCTCCCACAGCACCAGCTCCCAGGGCT
GTAGCTCAGGAGCCCCAGCAAATAGGTGGACCCCAGGGGCAGGACCCTAAAGAGGAGGCT
TGGGCAAATGTTTTAAGGTTTCAAGGTGCTATCAGTGGGGCAGGAGGCGGGGTAGCTGTT
CACAGACCGCCCAATCCCTCCACAGCTGTCCTTGCCATATCTCCCACACCAGAGATGTCT
GTGTCCGTCTCTGCTCCCTGAAGGCAGCACAGGCCTCATCTGCTCCCTGGGCCTGGCCAC
AACCCACCCCTGGCTGGTGTCCACTTTCCTTGTCTCTCCTGGGCCTCTGTGCTCATGGTT
AGGGCAAGGAGCCCACATGATCAGGCCCTGGGGGGCAGAGTCAGAGGTACTGGGGGAACG
CCAGCCTGTGCCCAACGCTTGCCCCCACAAGGCCAGCACTAACAGGACAGCCCTTTTTGT
TGTCATTTAACATCTTTATTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAAATGAAGGAAAAAGAAAAGAGGAAACTATTGGCATCACCCCCCTCCAGGTGATGG
GGGTGCTGGAGGCTGCAGGTACAATGAGGAGAGGCCTGGGGAGCAGGTGTGACTGGTCAC
TCTGCTAAGGCCTGAGCCAGAGTGGGATGACCAGGCCCAGCCCAAGTCAACTTCAGCTGC
TCATCCCCACCTCTCCCATGCCCCCTAACTTGCCCCTCATCCCAGAGGGTTTGGGGAGAA
GTTGGGGTGCCAGCGGCCCCTTTTGAAGGAGTTGTGGACCCAGTATGAGTGCTGCCAGAT
ATTGATCAAGGACTTGAGCCTGAATGCCAGGAATGCATTGGGCAGGCACAGCAAGGTGTG
AAGACCACAGATGCAGCTGTGCACTGTGGGGAGTGAGGCGGGCAGGGGCTGGACCCCAGG
CGTTTGCTTTTCCCACTCACGACCCCGCTGGCAGGCGCAGGGATCCTCGACCTGCACCAG
GCTGCACTGAAGGCTGGGTCCTGAAGAAAATGTCCCCAGAAACTGCTGGGCCTCAGGGTG
TGTGAGTCAGGCCCCGGGTGGGCAGACGGGCTAGCTCCCACAGCACCAGCTCCCAGGGCT
GTAGCTCAGGAGCCCCAGCAAATAGGTGGACCCCAGGGGCAGGACCCTAAAGAGGAGGCT
TGGGCAAATGTTTTAAGGTTTCAAGGTGCTATCAGTGGGGCAGGAGGCGGGGTAGCTGTT
CACAGACCGCCCAATCCCTCCACAGCTGTCCTTGCCATATCTCCCACACCAGAGATGTCT
GTGTCCGTCTCTGCTCCCTGAAGGCAGCACAGGCCTCATCTGCTCCCTGGGCCTGGCCAC
AACCCACCCCTGGCTGGTGTCCACTTTCCTTGTCTCTCCTGGGCCTCTGTGCTCATGGTT
AGGGCAAGGAGCCCACATGATCAGGCCCTGGGGGGCAGAGTCAGAGGTACTGGGGGAACG
CCAGCCTGTGCCCAACGCTTGCCCCCACAAGGCCAGCACTAACAGGACAGCCCTTTTTGT
TGTCATTTAACATCTTTATTCCTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               4-199, - strand, RNAz p=0.999595
               

               
               428-662, - strand, RNAz p=0.972336
               

               
               850-950, + strand, RNAz p=0.636839

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-199, - strand, RNAz p=0.999595
               

               
               428-662, - strand, RNAz p=0.972336
               

               
               850-950, + strand, RNAz p=0.636839

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               519-643, - strand, RNAmicro p=0.986367
               

               
               403-460, + strand, RNAmicro p=0.929926

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               519-643, - strand, RNAmicro p=0.986367
               

               
               403-460, + strand, RNAmicro p=0.929926

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145166, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145166, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1044, gnl|bosTau2|chr22 (14293099-14292047)
               

               
               4-1044, gnl|Hg17|chr3 (42681355-42682369)
               

               
               4-1044, gnl|Mm7|chr9 (121469943-121470865)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1044, gnl|bosTau2|chr22 (14293099-14292047)
               

               
               4-1044, gnl|Hg17|chr3 (42681355-42682369)
               

               
               4-1044, gnl|Mm7|chr9 (121469943-121470865)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	4-199, - strand, RNAz p=0.999595
	428-662, - strand, RNAz p=0.972336
	850-950, + strand, RNAz p=0.636839

	519-643, - strand, RNAmicro p=0.986367
	403-460, + strand, RNAmicro p=0.929926

	4-1044, gnl\|bosTau2\|chr22 (14293099-14292047)
	4-1044, gnl\|Hg17\|chr3 (42681355-42682369)
	4-1044, gnl\|Mm7\|chr9 (121469943-121470865)