Non-Coding RNA Search

Ss1.1-Ova1-OVRM10213D08.5.5

Sequence:


               
               CCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTC
ACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCC
TACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCA
GACATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGAT
TATGACTGAACGCCTCTAAGTCAGAATCCCGCCCAGGCGGAACGATACGGCAGCGCCGCG
GGAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGCCGTCCCCGCCGGCGGGCCGCCGCG
CGCGCCCGCGTGCGGCGTGTCCCGTCGCGCGTCGGGACCGGGGTCCGGTGCGGAGAGCCC
TTCGTCCTGGGAAACGGGGCGCGGCCGGAAAGCGCGGCCGCCCCCTCGCCCGTCACGCAC
CGCACGTTCGTGGGGAACCTGGTGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGG
GTTTCGTACGTAGCAGAGCAGCTCCCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACAC
AAGGGTTTGTGACCACTGGCAACGGCGGCAGCTCGTTCCCGCGCGCTCCTCGCACCCGCA
ACGTCCCCCGGAGACCGACCCCCGCCCCTCGGCACAGGCCGGGGCCCGAACCCTGCGGGT
GCCGCGTCTCCACCCGGCGCCTCCATCGCCTCCAACGAGCCATGTTCCAGGCTGCAGGAG
CCGCCCAGGCCACCCCTTCTCACGAAACCAAAGGCGGCGGAGGAAGCAGTACAGTGCAGC
GCTCCAAGTCCTTCAGCCTCCGGGCCCAGGTGAAGGAGACCTGCACTGCCTGCCAGAAGA
CTGTGTACCCCATGGAGCGGCTGGTGGCTGACAAGCTCATTTTCCACAACTCTTGCTTCT
GCTGCAAGCACTGTCACACCAAGCTCAGCCTGGGCAGCTATGCAGCGCTGCATGGGGAAT
TTTACTGCAAACCCCACTTTCAGCAGCTGTTTAAGAGCAAAGGCAACTACGATGAAGGCT
TTGGCCGGAAGCAGCACAAGGAGCTCTGGGCCCACAAGGAGGTGGACTCCGGCACCAAGA
CAGCCTGAGGCCCCTCTGGCAGTCCCCTCCCTCCTCCCTCCATAGAGGGCCTGGAGCGGG
CAGTTGGAAGGGTGGGAGATTGGACCTTGGGCTTGGTTGGGGCAGGGTGGGAAGGGGATG
AGGCCATCTTGCTCAGGCAGGGTTATGGGGACAGGGCTTTGCTCCAGGATTTCTTCTTCT
CCCTCAGTAGGCCGGGGTTTGGGAACCAGGATTGGGCTTTGCTCAGCACCCTGCTTCCTG
CTTCTTTCAGCCTACCCCACTTCACCCCGTGGCCCCCTTGGGAGGCCCCCAGATTCAGCT
TCCCTATCTAGGTGCCTTTTCTCCAGCAAGGAGTCAGCATGCCCTCCTCAGGGTCCCGAG
CTCCCTCACTGCCACCTGGGGCCCTGGGCAGCCCCCACGTCTCCCCATCTACCTCTGCCC
TTAGCCTGGTCCTGAGCCATGGAGAATGGAGGAAGGTGAGCCAGGGTGCGCCCTGCTGGG
CCTCTCCAGGTGCCCACCAGGACCCCCCCCCCCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTC
ACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCC
TACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCA
GACATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGAT
TATGACTGAACGCCTCTAAGTCAGAATCCCGCCCAGGCGGAACGATACGGCAGCGCCGCG
GGAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGCCGTCCCCGCCGGCGGGCCGCCGCG
CGCGCCCGCGTGCGGCGTGTCCCGTCGCGCGTCGGGACCGGGGTCCGGTGCGGAGAGCCC
TTCGTCCTGGGAAACGGGGCGCGGCCGGAAAGCGCGGCCGCCCCCTCGCCCGTCACGCAC
CGCACGTTCGTGGGGAACCTGGTGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGG
GTTTCGTACGTAGCAGAGCAGCTCCCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACAC
AAGGGTTTGTGACCACTGGCAACGGCGGCAGCTCGTTCCCGCGCGCTCCTCGCACCCGCA
ACGTCCCCCGGAGACCGACCCCCGCCCCTCGGCACAGGCCGGGGCCCGAACCCTGCGGGT
GCCGCGTCTCCACCCGGCGCCTCCATCGCCTCCAACGAGCCATGTTCCAGGCTGCAGGAG
CCGCCCAGGCCACCCCTTCTCACGAAACCAAAGGCGGCGGAGGAAGCAGTACAGTGCAGC
GCTCCAAGTCCTTCAGCCTCCGGGCCCAGGTGAAGGAGACCTGCACTGCCTGCCAGAAGA
CTGTGTACCCCATGGAGCGGCTGGTGGCTGACAAGCTCATTTTCCACAACTCTTGCTTCT
GCTGCAAGCACTGTCACACCAAGCTCAGCCTGGGCAGCTATGCAGCGCTGCATGGGGAAT
TTTACTGCAAACCCCACTTTCAGCAGCTGTTTAAGAGCAAAGGCAACTACGATGAAGGCT
TTGGCCGGAAGCAGCACAAGGAGCTCTGGGCCCACAAGGAGGTGGACTCCGGCACCAAGA
CAGCCTGAGGCCCCTCTGGCAGTCCCCTCCCTCCTCCCTCCATAGAGGGCCTGGAGCGGG
CAGTTGGAAGGGTGGGAGATTGGACCTTGGGCTTGGTTGGGGCAGGGTGGGAAGGGGATG
AGGCCATCTTGCTCAGGCAGGGTTATGGGGACAGGGCTTTGCTCCAGGATTTCTTCTTCT
CCCTCAGTAGGCCGGGGTTTGGGAACCAGGATTGGGCTTTGCTCAGCACCCTGCTTCCTG
CTTCTTTCAGCCTACCCCACTTCACCCCGTGGCCCCCTTGGGAGGCCCCCAGATTCAGCT
TCCCTATCTAGGTGCCTTTTCTCCAGCAAGGAGTCAGCATGCCCTCCTCAGGGTCCCGAG
CTCCCTCACTGCCACCTGGGGCCCTGGGCAGCCCCCACGTCTCCCCATCTACCTCTGCCC
TTAGCCTGGTCCTGAGCCATGGAGAATGGAGGAAGGTGAGCCAGGGTGCGCCCTGCTGGG
CCTCTCCAGGTGCCCACCAGGACCCCCCCCCCCCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61555070|gb|AAX46655.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61555070|gb|AAX46655.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-319, + strand, RNAz p=0.687903
               

               
               1333-1529, - strand, RNAz p=0.99183

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, + strand, RNAz p=0.687903
               

               
               1333-1529, - strand, RNAz p=0.99183

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-367, gnl|bosTau2|chr10 (49445096-49444733)
               

               
               1-367, gnl|Hg17|chr2 (132870522-132870151)
               

               
               1-367, gnl|Mm7|chrUn_random (8650114-8649749)
               


               
               381-615, gnl|bosTau2|chr5 (55181319-55181098)
               

               
               381-615, gnl|Hg17|chr12 (126175561-126175324)
               

               
               381-615, gnl|Mm7|chr3_random (357-587)
               


               
               387-610, gnl|bosTau2|chr1 (72557463-72557685)
               

               
               387-610, gnl|Hg17|chr9 (76416282-76416504)
               

               
               387-610, gnl|Mm7|chr9 (118355520-118355317)
               


               
               395-609, gnl|bosTau2|chr10 (49444678-49444467)
               

               
               395-609, gnl|Mm7|chrUn_random (8649703-8649494)
               


               
               405-608, gnl|bosTau2|chr10 (7907395-7907597)
               

               
               405-608, gnl|Hg17|chr12 (126175528-126175335)
               

               
               405-608, gnl|Mm7|chrUn_random (8649699-8649495)
               


               
               986-1645, gnl|bosTau2|chr19 (40400293-40399632)
               

               
               986-1645, gnl|Hg17|chr17 (59129806-59129149)
               

               
               986-1645, gnl|Mm7|chr11 (106267877-106267265)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-367, gnl|bosTau2|chr10 (49445096-49444733)
               

               
               1-367, gnl|Hg17|chr2 (132870522-132870151)
               

               
               1-367, gnl|Mm7|chrUn_random (8650114-8649749)
               


               
               381-615, gnl|bosTau2|chr5 (55181319-55181098)
               

               
               381-615, gnl|Hg17|chr12 (126175561-126175324)
               

               
               381-615, gnl|Mm7|chr3_random (357-587)
               


               
               387-610, gnl|bosTau2|chr1 (72557463-72557685)
               

               
               387-610, gnl|Hg17|chr9 (76416282-76416504)
               

               
               387-610, gnl|Mm7|chr9 (118355520-118355317)
               


               
               395-609, gnl|bosTau2|chr10 (49444678-49444467)
               

               
               395-609, gnl|Mm7|chrUn_random (8649703-8649494)
               


               
               405-608, gnl|bosTau2|chr10 (7907395-7907597)
               

               
               405-608, gnl|Hg17|chr12 (126175528-126175335)
               

               
               405-608, gnl|Mm7|chrUn_random (8649699-8649495)
               


               
               986-1645, gnl|bosTau2|chr19 (40400293-40399632)
               

               
               986-1645, gnl|Hg17|chr17 (59129806-59129149)
               

               
               986-1645, gnl|Mm7|chr11 (106267877-106267265)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fty (0.527519)
               

               
               cly (0.361925)
               

               
               nca (0.273748)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               cbr (0.127975)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.527519)
               

               
               cly (0.361925)
               

               
               nca (0.273748)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               cbr (0.127975)
               

               
               eje (0.0988338)

	200-319, + strand, RNAz p=0.687903
	1333-1529, - strand, RNAz p=0.99183

	1-367, gnl\|bosTau2\|chr10 (49445096-49444733)
	1-367, gnl\|Hg17\|chr2 (132870522-132870151)
	1-367, gnl\|Mm7\|chrUn_random (8650114-8649749)

	381-615, gnl\|bosTau2\|chr5 (55181319-55181098)
	381-615, gnl\|Hg17\|chr12 (126175561-126175324)
	381-615, gnl\|Mm7\|chr3_random (357-587)

	387-610, gnl\|bosTau2\|chr1 (72557463-72557685)
	387-610, gnl\|Hg17\|chr9 (76416282-76416504)
	387-610, gnl\|Mm7\|chr9 (118355520-118355317)

	395-609, gnl\|bosTau2\|chr10 (49444678-49444467)
	395-609, gnl\|Mm7\|chrUn_random (8649703-8649494)

	405-608, gnl\|bosTau2\|chr10 (7907395-7907597)
	405-608, gnl\|Hg17\|chr12 (126175528-126175335)
	405-608, gnl\|Mm7\|chrUn_random (8649699-8649495)

	986-1645, gnl\|bosTau2\|chr19 (40400293-40399632)
	986-1645, gnl\|Hg17\|chr17 (59129806-59129149)
	986-1645, gnl\|Mm7\|chr11 (106267877-106267265)

	fty (0.527519)
	cly (0.361925)
	nca (0.273748)
	eep (0.245128)
	med (0.232504)
	cty (0.20816)
	fli (0.202881)
	ill (0.175593)
	lnt (0.142308)
	cbr (0.127975)
	eje (0.0988338)