Non-Coding RNA Search

Ss1.1-Ova1-OVRM10213E06.5

Sequence:


               
               ACCAAGCAGCAACAGCCCTTGGAGAGAGACTAAGCTTTCTTGACCTCTACAGTGGCACAG
TGGCAAAGAGCTTGAGAAAGTTGGCACTTCTGGGCTACACCATTGTCATCCAGGACATTA
ATGCCTCCCTCTTTGTTCCTCTGAGACCGTCCAGATCAGCACCTGTTTATTTTCAAATCT
CACAAACCCCACCCCAGATCTTCATAGTTTGGTTCTCAGCTGCTCTTGAAGGACAGCGAG
TGACTTATTACCACCACCACAACAGAGCCTGCCTTCTCCAGCAGATCTCCAGTCAGCTCC
CGACATCATCCCCACCCCCTTCTCCCTTGTGGCCTCCTAAATGCCCATCTCGTTAGCCTG
GGTTCATCCGGTGGTATGGAGGGGTGCTGCCTAGCACTGACCTGGAAGTGTGTGTGACCC
TCTGACCCAATGGACATCAAAGGCCAGTTCTGGAATGATGATGATTCGGAGGGAGATAAT
GAATCAGAGGAATTTCTCTATGGAGTTCAGGGGAGCTGTGCAGCTGACCTCTATCGACAC
CCACAGCTTGATGCAGACATTGAAGCCGTGAAGGAGATCTACAGTGAGAACTCTGTATTC
ATCAGAGAATATGGAACTATCGATGACGTGGACATTGACCTCCACATCAACATCAGCTTC
CTCGATGAGGAAGTTTCTACAGCCTGGAAGGTCCTCCGGACAGAACCTATTGTGTTGAGG
CTGCGATTTTCTCTCTCCCAGTACCTTGATGGACCAGAACCATCGATTGAAGTTTTCCAG
CCATCGAATAAGGAAGGATTTGGGTTGGGTCTTCAGTTGAAGAAGATCCTGGGTATGTTT
ACATCCCAACAATGGAAACATCTCAGCAATGATTTCCTCAAGACCCAGCAGGAAAAGAGG
CATAGCTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGGCCTCAGCATCTTC
TCACCCATCCCCAAGTCTCCCAGCTTCCCTATCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAAGCAGCAACAGCCCTTGGAGAGAGACTAAGCTTTCTTGACCTCTACAGTGGCACAG
TGGCAAAGAGCTTGAGAAAGTTGGCACTTCTGGGCTACACCATTGTCATCCAGGACATTA
ATGCCTCCCTCTTTGTTCCTCTGAGACCGTCCAGATCAGCACCTGTTTATTTTCAAATCT
CACAAACCCCACCCCAGATCTTCATAGTTTGGTTCTCAGCTGCTCTTGAAGGACAGCGAG
TGACTTATTACCACCACCACAACAGAGCCTGCCTTCTCCAGCAGATCTCCAGTCAGCTCC
CGACATCATCCCCACCCCCTTCTCCCTTGTGGCCTCCTAAATGCCCATCTCGTTAGCCTG
GGTTCATCCGGTGGTATGGAGGGGTGCTGCCTAGCACTGACCTGGAAGTGTGTGTGACCC
TCTGACCCAATGGACATCAAAGGCCAGTTCTGGAATGATGATGATTCGGAGGGAGATAAT
GAATCAGAGGAATTTCTCTATGGAGTTCAGGGGAGCTGTGCAGCTGACCTCTATCGACAC
CCACAGCTTGATGCAGACATTGAAGCCGTGAAGGAGATCTACAGTGAGAACTCTGTATTC
ATCAGAGAATATGGAACTATCGATGACGTGGACATTGACCTCCACATCAACATCAGCTTC
CTCGATGAGGAAGTTTCTACAGCCTGGAAGGTCCTCCGGACAGAACCTATTGTGTTGAGG
CTGCGATTTTCTCTCTCCCAGTACCTTGATGGACCAGAACCATCGATTGAAGTTTTCCAG
CCATCGAATAAGGAAGGATTTGGGTTGGGTCTTCAGTTGAAGAAGATCCTGGGTATGTTT
ACATCCCAACAATGGAAACATCTCAGCAATGATTTCCTCAAGACCCAGCAGGAAAAGAGG
CATAGCTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGGCCTCAGCATCTTC
TCACCCATCCCCAAGTCTCCCAGCTTCCCTATCATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61861336|ref|XP_594639.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861336|ref|XP_594639.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               113-232, gnl|bosTau2|chr10 (10646505-10646381)
               

               
               113-232, gnl|Hg17|chr15 (70350542-70350417)
               

               
               113-232, gnl|Mm7|chr9 (59645530-59645635)
               


               
               239-433, gnl|bosTau2|chr10 (10644502-10644298)
               

               
               239-433, gnl|Hg17|chr15 (70347063-70346869)
               

               
               239-433, gnl|Mm7|chr9 (59649279-59649471)
               


               
               826-976, gnl|bosTau2|chr10 (10639013-10638863)
               

               
               826-976, gnl|Hg17|chr15 (70341101-70340951)
               

               
               826-976, gnl|Mm7|chr9 (59655447-59655597)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-232, gnl|bosTau2|chr10 (10646505-10646381)
               

               
               113-232, gnl|Hg17|chr15 (70350542-70350417)
               

               
               113-232, gnl|Mm7|chr9 (59645530-59645635)
               


               
               239-433, gnl|bosTau2|chr10 (10644502-10644298)
               

               
               239-433, gnl|Hg17|chr15 (70347063-70346869)
               

               
               239-433, gnl|Mm7|chr9 (59649279-59649471)
               


               
               826-976, gnl|bosTau2|chr10 (10639013-10638863)
               

               
               826-976, gnl|Hg17|chr15 (70341101-70340951)
               

               
               826-976, gnl|Mm7|chr9 (59655447-59655597)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ecc (0.115035)

	113-232, gnl\|bosTau2\|chr10 (10646505-10646381)
	113-232, gnl\|Hg17\|chr15 (70350542-70350417)
	113-232, gnl\|Mm7\|chr9 (59645530-59645635)

	239-433, gnl\|bosTau2\|chr10 (10644502-10644298)
	239-433, gnl\|Hg17\|chr15 (70347063-70346869)
	239-433, gnl\|Mm7\|chr9 (59649279-59649471)

	826-976, gnl\|bosTau2\|chr10 (10639013-10638863)
	826-976, gnl\|Hg17\|chr15 (70341101-70340951)
	826-976, gnl\|Mm7\|chr9 (59655447-59655597)