Ss1.1-Ova1-OVRM10213E12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTACAGCCTGGAGCACCCAGCTGCTGCGGGCGGCCGGGGACCCTGGACCCCTCCTCACA CTGAGCCTGACCCAGGTTCGCTCTAGACCAGAAGCCAGAAAGCCCCCACCCAGGAGGATC TGAGGCGCCTCCTCCTCCCATGTAAACAAGAAGGGGTTCAGCAGCTCATCCGGACCCTGC AGAAGAAGGGGCTCAAAGCACCTGGCTAACCACCCACTCCTCCTTCTTGCCCAAGAAAGG AAGGAAGGAAGCCCTGCTTCCCAAGGATGACACTAAACACTCAGCAAGAAGGAAAGACCC CCCTTCGTCGGCGAGCCAGCACTCCACTGCCCCTGTCGGCCCGGGGCCACCAGCCTGGCC TCTTGGGCACAGCATCTTCCACACGATCCCAGCATCCCCGACTGGGCCAATCAGCCTCCC TCAATCCCCCCAACCGGCAACGTTCACCTGCTCCCAGCGGCTGGTCCTCTGAATCCAGCG ACTCTGAAGGCTCCTGGGAAGCCCTCTACCGTGTGGTACTGCTCGGAGATCCTGGCGTAG GGAAGACCAGCCTGGCCAACCTCTTTGCGGGAAAGCAAGAGCGGGACCTCCATGAACCGC TGGGAGAAGATGTGTATGAGAGGACCCTCACGGTGGATGGAGAGGACACCACGCTGCTGG TCATGGACACCTGGGAGGCTGAGAAACCGGATGATAGCTGGAGCCAGGAGTCATGCCTGC AGGTGGGCAGCGCCTACGTCATCGTGTACTCCATCGCAGACCGCGGCAGCTTCGAGAGTG CCTCTGAGCTCCGCATTCAGCTGCGGCGCACGCATCAGGCAGACCACGTGCCCATCATCC TGGTGGGCAACAAGGCGGACCTGGCACGCTGCCGGGAAGTCTCTGTGGAAGAGGGCCGCG CCTGCGCTGTGGTGTTTGACTGCAAATTCATCGAGACGTCGGCCACGCTGCAGCACAACG TGACGGAGCTCTTCGAAGGCGTGGTCCGACAACTGCGCTTGCGCCGCCGGGACCTCAGGG CCCAGGGGCCACCCACGCCACGACGGCGGGCAAGCCTCGGCCAGCGCGCTCGTCGCTTCT TGGCGCGCCTAGTGGCCCGTAGCGCCCGCCGCCAGGCACTTAAGGAGCGCTCCAAGTCTT GCCACAACCTGGCCGTGCTCTGAGGCTGCCAATCTGCCAGGGATAGCGGGACACGGGTGT ACTATAGGCTCCACCAATGCCGCCTAGGGGCAGAGTCCCGGTGACCTGGATTCTGAGTCG TGGGCCTTGCCCACCCACTGCCGCAATGGACAGAGCATCTCCCCCAGCCGCAATTTCACA GACTTCTGTGCCCTGGGAAAATGATGGACAGACTATGGGGCCAAAGCACAAATTGGGTTT TTTATATGGTGTGTGTCTTTTTGTAAGCAGTCTTCGTTGTCCTTGGGCTCTGGCCTACCC TCAGAAACCACCCCGTCCCAAACCACCCCCTCCCACCAATAAACCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTACAGCCTGGAGCACCCAGCTGCTGCGGGCGGCCGGGGACCCTGGACCCCTCCTCACA CTGAGCCTGACCCAGGTTCGCTCTAGACCAGAAGCCAGAAAGCCCCCACCCAGGAGGATC TGAGGCGCCTCCTCCTCCCATGTAAACAAGAAGGGGTTCAGCAGCTCATCCGGACCCTGC AGAAGAAGGGGCTCAAAGCACCTGGCTAACCACCCACTCCTCCTTCTTGCCCAAGAAAGG AAGGAAGGAAGCCCTGCTTCCCAAGGATGACACTAAACACTCAGCAAGAAGGAAAGACCC CCCTTCGTCGGCGAGCCAGCACTCCACTGCCCCTGTCGGCCCGGGGCCACCAGCCTGGCC TCTTGGGCACAGCATCTTCCACACGATCCCAGCATCCCCGACTGGGCCAATCAGCCTCCC TCAATCCCCCCAACCGGCAACGTTCACCTGCTCCCAGCGGCTGGTCCTCTGAATCCAGCG ACTCTGAAGGCTCCTGGGAAGCCCTCTACCGTGTGGTACTGCTCGGAGATCCTGGCGTAG GGAAGACCAGCCTGGCCAACCTCTTTGCGGGAAAGCAAGAGCGGGACCTCCATGAACCGC TGGGAGAAGATGTGTATGAGAGGACCCTCACGGTGGATGGAGAGGACACCACGCTGCTGG TCATGGACACCTGGGAGGCTGAGAAACCGGATGATAGCTGGAGCCAGGAGTCATGCCTGC AGGTGGGCAGCGCCTACGTCATCGTGTACTCCATCGCAGACCGCGGCAGCTTCGAGAGTG CCTCTGAGCTCCGCATTCAGCTGCGGCGCACGCATCAGGCAGACCACGTGCCCATCATCC TGGTGGGCAACAAGGCGGACCTGGCACGCTGCCGGGAAGTCTCTGTGGAAGAGGGCCGCG CCTGCGCTGTGGTGTTTGACTGCAAATTCATCGAGACGTCGGCCACGCTGCAGCACAACG TGACGGAGCTCTTCGAAGGCGTGGTCCGACAACTGCGCTTGCGCCGCCGGGACCTCAGGG CCCAGGGGCCACCCACGCCACGACGGCGGGCAAGCCTCGGCCAGCGCGCTCGTCGCTTCT TGGCGCGCCTAGTGGCCCGTAGCGCCCGCCGCCAGGCACTTAAGGAGCGCTCCAAGTCTT GCCACAACCTGGCCGTGCTCTGAGGCTGCCAATCTGCCAGGGATAGCGGGACACGGGTGT ACTATAGGCTCCACCAATGCCGCCTAGGGGCAGAGTCCCGGTGACCTGGATTCTGAGTCG TGGGCCTTGCCCACCCACTGCCGCAATGGACAGAGCATCTCCCCCAGCCGCAATTTCACA GACTTCTGTGCCCTGGGAAAATGATGGACAGACTATGGGGCCAAAGCACAAATTGGGTTT TTTATATGGTGTGTGTCTTTTTGTAAGCAGTCTTCGTTGTCCTTGGGCTCTGGCCTACCC TCAGAAACCACCCCGTCCCAAACCACCCCCTCCCACCAATAAACCAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 64-606, gnl|bosTau2|chr13 (43208144-43208703) | |
| 64-606, gnl|Hg17|chr20 (29527679-29528249) | |
| 64-606, gnl|Mm7|chr2 (152368747-152369292) | |
| 732-889, gnl|bosTau2|chr18 (28175399-28175242) | |
| 732-889, gnl|canFam2|chr5 (85401602-85401368) | |
| 732-889, gnl|danRer3|chr7 (36464852-36465069) | |
| 732-889, gnl|dasNov1|scaffold_18644 (25048-25278) | |
| 732-889, gnl|echTel1|scaffold_298384 (2969-2739) | |
| 732-889, gnl|fr1|chrUn (209457135-209456904) | |
| 732-889, gnl|galGal2|chr11 (11510685-11510471) | |
| 732-889, gnl|hg17|chr16 (65514915-65515146) | |
| 732-889, gnl|Hg17|chr16 (65515079-65514922) | |
| 732-889, gnl|loxAfr1|scaffold_184115 (837-607) | |
| 732-889, gnl|mm7|chr8 (103228819-103229049) | |
| 732-889, gnl|Mm7|chr8 (103228983-103228826) | |
| 732-889, gnl|monDom2|scaffold_23 (20474574-20474362) | |
| 732-889, gnl|oryCun1|scaffold_211458 (124504-124734) | |
| 732-889, gnl|panTro1|chr18 (59753242-59753472) | |
| 732-889, gnl|rheMac2|chr20 (65214023-65214253) | |
| 732-889, gnl|rn3|chr19 (274535-274305) | |
| 732-889, gnl|tetNig1|chr5 (7880563-7880794) | |
| 732-889, gnl|xenTro1|scaffold_1104 (6987-6763) | |
| 890-1406, gnl|bosTau2|chr13 (43215737-43216257) | |
| 890-1406, gnl|Hg17|chr20 (29535621-29536147) | |
| 890-1406, gnl|Mm7|chr2 (152375301-152375825) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-606, gnl|bosTau2|chr13 (43208144-43208703) | |
| 64-606, gnl|Hg17|chr20 (29527679-29528249) | |
| 64-606, gnl|Mm7|chr2 (152368747-152369292) | |
| 732-889, gnl|bosTau2|chr18 (28175399-28175242) | |
| 732-889, gnl|canFam2|chr5 (85401602-85401368) | |
| 732-889, gnl|danRer3|chr7 (36464852-36465069) | |
| 732-889, gnl|dasNov1|scaffold_18644 (25048-25278) | |
| 732-889, gnl|echTel1|scaffold_298384 (2969-2739) | |
| 732-889, gnl|fr1|chrUn (209457135-209456904) | |
| 732-889, gnl|galGal2|chr11 (11510685-11510471) | |
| 732-889, gnl|hg17|chr16 (65514915-65515146) | |
| 732-889, gnl|Hg17|chr16 (65515079-65514922) | |
| 732-889, gnl|loxAfr1|scaffold_184115 (837-607) | |
| 732-889, gnl|mm7|chr8 (103228819-103229049) | |
| 732-889, gnl|Mm7|chr8 (103228983-103228826) | |
| 732-889, gnl|monDom2|scaffold_23 (20474574-20474362) | |
| 732-889, gnl|oryCun1|scaffold_211458 (124504-124734) | |
| 732-889, gnl|panTro1|chr18 (59753242-59753472) | |
| 732-889, gnl|rheMac2|chr20 (65214023-65214253) | |
| 732-889, gnl|rn3|chr19 (274535-274305) | |
| 732-889, gnl|tetNig1|chr5 (7880563-7880794) | |
| 732-889, gnl|xenTro1|scaffold_1104 (6987-6763) | |
| 890-1406, gnl|bosTau2|chr13 (43215737-43216257) | |
| 890-1406, gnl|Hg17|chr20 (29535621-29536147) | |
| 890-1406, gnl|Mm7|chr2 (152375301-152375825) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) |