Non-Coding RNA Search

Ss1.1-Ova1-OVRM10217A05.5

Sequence:


               
               TTTTACCTTCTAGGTCAGTATAGTCTAAATTTAAACAATATTCCTGATCAGCCAAAGGAC
GAGAACATCATGGGCTTACTTCAAAAAACTGAGGCTGTTTCATCTGTTCAGGATGAAAAA
AAACCTGTTTTAAATAAAAATCAGGTGACATCTAATCAGTATGAGCAGAAAATCACCACG
TATGTAATTCATATCTGTTATTGTGAGGTCATCTTGGGAATATGGTTTTACTTTTCCTTT
ACTTGCATGTGAAGTATTTACTCTGAAGACTAGAACTATTTAAAACTTTAATATTTATGG
AGTAAGTTGTATAGAAGTGTATAATAACGTTACTGTTATTTATTTATGTTTTTGCTGTAT
CTACAGCATTTGAAGGTTCCTGGGCTTGGGATCAAACCAACATAGGTGCAACCTGTGCCT
CAGCTTCAGCAATGCCAGATCCTTAATCCCCTGTGCCACATGGGATTTCCACTGTTACTT
TTTTGTGTTTTGTCTTAGAGACAATGTATGGAAACCAGCTGATATATTCAGTACTCTGGG
AGAAAGAGAACGTGATAGAAGTTTGTTGGAAGCGAAAAAAGCCCAGTGGAAGAAAGAGCT
TGACGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGCTTCTGAAAAACGGTACAATCC
TTGGAAAAAATCTGAAAATGATAAAGTAGTATGGGAAAATCTTCAAATTCTTGATCAGTC
AAAGACTTTTCCTAGCTCTTCTAGCATTCTGTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTACCTTCTAGGTCAGTATAGTCTAAATTTAAACAATATTCCTGATCAGCCAAAGGAC
GAGAACATCATGGGCTTACTTCAAAAAACTGAGGCTGTTTCATCTGTTCAGGATGAAAAA
AAACCTGTTTTAAATAAAAATCAGGTGACATCTAATCAGTATGAGCAGAAAATCACCACG
TATGTAATTCATATCTGTTATTGTGAGGTCATCTTGGGAATATGGTTTTACTTTTCCTTT
ACTTGCATGTGAAGTATTTACTCTGAAGACTAGAACTATTTAAAACTTTAATATTTATGG
AGTAAGTTGTATAGAAGTGTATAATAACGTTACTGTTATTTATTTATGTTTTTGCTGTAT
CTACAGCATTTGAAGGTTCCTGGGCTTGGGATCAAACCAACATAGGTGCAACCTGTGCCT
CAGCTTCAGCAATGCCAGATCCTTAATCCCCTGTGCCACATGGGATTTCCACTGTTACTT
TTTTGTGTTTTGTCTTAGAGACAATGTATGGAAACCAGCTGATATATTCAGTACTCTGGG
AGAAAGAGAACGTGATAGAAGTTTGTTGGAAGCGAAAAAAGCCCAGTGGAAGAAAGAGCT
TGACGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGCTTCTGAAAAACGGTACAATCC
TTGGAAAAAATCTGAAAATGATAAAGTAGTATGGGAAAATCTTCAAATTCTTGATCAGTC
AAAGACTTTTCCTAGCTCTTCTAGCATTCTGTCACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               473-602, + strand, RNAz p=0.79467

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               473-602, + strand, RNAz p=0.79467

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-308, gnl|bosTau2|chr22 (32559306-32559612)
               

               
               1-308, gnl|Hg17|chr3 (56575649-56575966)
               

               
               1-308, gnl|Mm7|chr14 (24931668-24931369)
               


               
               473-602, gnl|bosTau2|chr22 (32561043-32561172)
               

               
               473-602, gnl|Hg17|chr3 (56575993-56576121)
               

               
               473-602, gnl|Mm7|chr14 (24931340-24931211)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr22 (32559306-32559612)
               

               
               1-308, gnl|Hg17|chr3 (56575649-56575966)
               

               
               1-308, gnl|Mm7|chr14 (24931668-24931369)
               


               
               473-602, gnl|bosTau2|chr22 (32561043-32561172)
               

               
               473-602, gnl|Hg17|chr3 (56575993-56576121)
               

               
               473-602, gnl|Mm7|chr14 (24931340-24931211)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	1-308, gnl\|bosTau2\|chr22 (32559306-32559612)
	1-308, gnl\|Hg17\|chr3 (56575649-56575966)
	1-308, gnl\|Mm7\|chr14 (24931668-24931369)

	473-602, gnl\|bosTau2\|chr22 (32561043-32561172)
	473-602, gnl\|Hg17\|chr3 (56575993-56576121)
	473-602, gnl\|Mm7\|chr14 (24931340-24931211)