Ss1.1-Ova1-OVRM10217C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCATGTTCTCCAAGGATAAGGATATCATACCATTTATTGATAAATACTGGGAGTGCATG ACGACCAGACAGAGACCTGGGAAAATGACTTGGCCAAATAACATTGTTAAAACAATGAGT AAAGAAAGAGATGTGTTCTTAGTAAATGAACACCCTGATCCTGGGAGTAAGGACCCAGAA GAAGATTACCCCAAGTTTGGCCTTCTGGATCAGGATCTTAGTAACATTGGCCCTGCTTAT GACAACCAAAAACAAAGCAGCACTGTTTCTACCAGTGGGAATCTAAATGGAGGAATTGCA GCAGGAAGCAGTGGGAAAGGAAGAGGCGCTAAGCGCAAGCAGCAGGATGGCGGAACCACG GGGACCACCAAGAAGGCCCGGAGTGACCCCTTGTTTTCTGCTCAGCGCCTTCCCCCTCAT GGCTACCCATTGGAACACCCATTTAACAAAGACGGCTATCGGTATATTCTAGCGGAGCCC GATCCCCATGCCCCAGACCCTGAGAAGCTCGAACTTGACTGCTGGGCAGGAAAACCAATT CCTGGAGACCTCTACAGAGCTTGCTTGTATGAACGGGTTTTGTTAGCCCTACATGATCGA GCTCCCCAGTTAAAGATCTCTGATGACCGGCTGACTGTGGTTGGAGAGAAGGGCTATTCC ATGGTTCGGGCTTCTCATGGGGTTCGGAAGGGTGCCTGGTACTTTGAAATCACGGTGGAT GAGATGCCGCCAGACACTGCTGCCAGACTGGGCTGGTCCCAGCCCTTAGGTAACCTTCAA GCTCCCTTAGGTTATGATAAATTTAGCTATTCTTGGCGGAGCAAAAAAGGAACCAAGTTC CACCAGTCCATTGGCAAACACTACTCTTCTGGCTATGGACAGGGAGACGTCCTAGGGTTT TATATCAATCTTCCCGAAGACACGGAGACAGCCAAGTCACTACCCGATACCTATAAAGAT AAGGCTTTGATAAAGTTCAAGAGTTACTTGTATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCATGTTCTCCAAGGATAAGGATATCATACCATTTATTGATAAATACTGGGAGTGCATG ACGACCAGACAGAGACCTGGGAAAATGACTTGGCCAAATAACATTGTTAAAACAATGAGT AAAGAAAGAGATGTGTTCTTAGTAAATGAACACCCTGATCCTGGGAGTAAGGACCCAGAA GAAGATTACCCCAAGTTTGGCCTTCTGGATCAGGATCTTAGTAACATTGGCCCTGCTTAT GACAACCAAAAACAAAGCAGCACTGTTTCTACCAGTGGGAATCTAAATGGAGGAATTGCA GCAGGAAGCAGTGGGAAAGGAAGAGGCGCTAAGCGCAAGCAGCAGGATGGCGGAACCACG GGGACCACCAAGAAGGCCCGGAGTGACCCCTTGTTTTCTGCTCAGCGCCTTCCCCCTCAT GGCTACCCATTGGAACACCCATTTAACAAAGACGGCTATCGGTATATTCTAGCGGAGCCC GATCCCCATGCCCCAGACCCTGAGAAGCTCGAACTTGACTGCTGGGCAGGAAAACCAATT CCTGGAGACCTCTACAGAGCTTGCTTGTATGAACGGGTTTTGTTAGCCCTACATGATCGA GCTCCCCAGTTAAAGATCTCTGATGACCGGCTGACTGTGGTTGGAGAGAAGGGCTATTCC ATGGTTCGGGCTTCTCATGGGGTTCGGAAGGGTGCCTGGTACTTTGAAATCACGGTGGAT GAGATGCCGCCAGACACTGCTGCCAGACTGGGCTGGTCCCAGCCCTTAGGTAACCTTCAA GCTCCCTTAGGTTATGATAAATTTAGCTATTCTTGGCGGAGCAAAAAAGGAACCAAGTTC CACCAGTCCATTGGCAAACACTACTCTTCTGGCTATGGACAGGGAGACGTCCTAGGGTTT TATATCAATCTTCCCGAAGACACGGAGACAGCCAAGTCACTACCCGATACCTATAAAGAT AAGGCTTTGATAAAGTTCAAGAGTTACTTGTATTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 17-122, gnl|bosTau2|chr27 (21175489-21175593) | |
| 17-122, gnl|Hg17|chr8 (38090862-38090966) | |
| 17-122, gnl|Mm7|chr8 (24590340-24590236) | |
| 382-601, gnl|bosTau2|chr27 (21180074-21180293) | |
| 382-601, gnl|canFam2|chr16 (30305003-30304819) | |
| 382-601, gnl|canFam2|chr16 (30305041-30304776) | |
| 382-601, gnl|danRer3|chrUn (27311872-27311688) | |
| 382-601, gnl|danRer3|chrUn (27311897-27311661) | |
| 382-601, gnl|dasNov1|scaffold_259639 (1575-1319) | |
| 382-601, gnl|dasNov1|scaffold_291094 (1006-822) | |
| 382-601, gnl|fr1|chrUn (54255138-54254954) | |
| 382-601, gnl|fr1|chrUn (54255177-54254921) | |
| 382-601, gnl|galGal2|chrUn (449670-449854) | |
| 382-601, gnl|galGal2|chrUn (449642-449894) | |
| 382-601, gnl|hg17|chr22 (21019217-21019397) | |
| 382-601, gnl|hg17|chr8 (38097579-38097844) | |
| 382-601, gnl|Hg17|chr8 (38097605-38097824) | |
| 382-601, gnl|loxAfr1|scaffold_75330 (487-670) | |
| 382-601, gnl|loxAfr1|scaffold_9892 (56255-56515) | |
| 382-601, gnl|mm7|chr8 (24583871-24583688) | |
| 382-601, gnl|mm7|chr8 (24583910-24583644) | |
| 382-601, gnl|Mm7|chr8 (24583882-24583663) | |
| 382-601, gnl|monDom2|scaffold_1 (84789056-84788793) | |
| 382-601, gnl|oryCun1|scaffold_121880 (9213-9480) | |
| 382-601, gnl|oryCun1|scaffold_213923 (3211-3028) | |
| 382-601, gnl|panTro1|chr23 (21129973-21130153) | |
| 382-601, gnl|panTro1|chr7 (39478121-39478386) | |
| 382-601, gnl|rheMac2|chr10 (66250141-66250320) | |
| 382-601, gnl|rheMac2|chr8 (38575000-38575265) | |
| 382-601, gnl|rn3|chr16 (70629853-70630036) | |
| 382-601, gnl|rn3|chr16 (70629817-70630067) | |
| 382-601, gnl|tetNig1|chrUn_random (312182-312366) | |
| 382-601, gnl|tetNig1|chrUn_random (312151-312399) | |
| 382-601, gnl|xenTro1|scaffold_190 (806345-806161) | |
| 382-601, gnl|xenTro1|scaffold_190 (806383-806117) | |
| 768-964, gnl|bosTau2|chr27 (21187573-21187769) | |
| 768-964, gnl|canFam2|chr16 (30294900-30294714) | |
| 768-964, gnl|canFam2|chr3 (24767127-24766999) | |
| 768-964, gnl|danRer3|chrUn (27307228-27307042) | |
| 768-964, gnl|dasNov1|scaffold_17278 (20696-20510) | |
| 768-964, gnl|dasNov1|scaffold_17278 (20661-20515) | |
| 768-964, gnl|echTel1|scaffold_321713 (16582-16396) | |
| 768-964, gnl|echTel1|scaffold_321713 (16547-16401) | |
| 768-964, gnl|fr1|chrUn (54254260-54254074) | |
| 768-964, gnl|galGal2|chrUn (450595-450781) | |
| 768-964, gnl|hg17|chr22 (21019581-21019766) | |
| 768-964, gnl|hg17|chr5 (85734037-85734180) | |
| 768-964, gnl|Hg17|chr8 (38105431-38105627) | |
| 768-964, gnl|loxAfr1|scaffold_75330 (4120-4306) | |
| 768-964, gnl|loxAfr1|scaffold_75330 (4155-4301) | |
| 768-964, gnl|mm7|chr8 (24579370-24579188) | |
| 768-964, gnl|mm7|chr8 (24579339-24579192) | |
| 768-964, gnl|Mm7|chr8 (24579379-24579183) | |
| 768-964, gnl|monDom2|scaffold_1 (84787129-84786989) | |
| 768-964, gnl|oryCun1|scaffold_213923 (2824-2639) | |
| 768-964, gnl|oryCun1|scaffold_213923 (2793-2643) | |
| 768-964, gnl|panTro1|chr23 (21130338-21130523) | |
| 768-964, gnl|panTro1|chr4 (29498243-29498100) | |
| 768-964, gnl|rheMac2|chr10 (66250504-66250689) | |
| 768-964, gnl|rheMac2|chr6 (82631203-82631343) | |
| 768-964, gnl|rn3|chr16 (70633633-70633815) | |
| 768-964, gnl|rn3|chr16 (70633664-70633810) | |
| 768-964, gnl|tetNig1|chrUn_random (313083-313269) | |
| 768-964, gnl|tetNig1|chrUn_random (313123-313265) | |
| 768-964, gnl|xenTro1|scaffold_190 (805572-805386) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-122, gnl|bosTau2|chr27 (21175489-21175593) | |
| 17-122, gnl|Hg17|chr8 (38090862-38090966) | |
| 17-122, gnl|Mm7|chr8 (24590340-24590236) | |
| 382-601, gnl|bosTau2|chr27 (21180074-21180293) | |
| 382-601, gnl|canFam2|chr16 (30305003-30304819) | |
| 382-601, gnl|canFam2|chr16 (30305041-30304776) | |
| 382-601, gnl|danRer3|chrUn (27311872-27311688) | |
| 382-601, gnl|danRer3|chrUn (27311897-27311661) | |
| 382-601, gnl|dasNov1|scaffold_259639 (1575-1319) | |
| 382-601, gnl|dasNov1|scaffold_291094 (1006-822) | |
| 382-601, gnl|fr1|chrUn (54255138-54254954) | |
| 382-601, gnl|fr1|chrUn (54255177-54254921) | |
| 382-601, gnl|galGal2|chrUn (449670-449854) | |
| 382-601, gnl|galGal2|chrUn (449642-449894) | |
| 382-601, gnl|hg17|chr22 (21019217-21019397) | |
| 382-601, gnl|hg17|chr8 (38097579-38097844) | |
| 382-601, gnl|Hg17|chr8 (38097605-38097824) | |
| 382-601, gnl|loxAfr1|scaffold_75330 (487-670) | |
| 382-601, gnl|loxAfr1|scaffold_9892 (56255-56515) | |
| 382-601, gnl|mm7|chr8 (24583871-24583688) | |
| 382-601, gnl|mm7|chr8 (24583910-24583644) | |
| 382-601, gnl|Mm7|chr8 (24583882-24583663) | |
| 382-601, gnl|monDom2|scaffold_1 (84789056-84788793) | |
| 382-601, gnl|oryCun1|scaffold_121880 (9213-9480) | |
| 382-601, gnl|oryCun1|scaffold_213923 (3211-3028) | |
| 382-601, gnl|panTro1|chr23 (21129973-21130153) | |
| 382-601, gnl|panTro1|chr7 (39478121-39478386) | |
| 382-601, gnl|rheMac2|chr10 (66250141-66250320) | |
| 382-601, gnl|rheMac2|chr8 (38575000-38575265) | |
| 382-601, gnl|rn3|chr16 (70629853-70630036) | |
| 382-601, gnl|rn3|chr16 (70629817-70630067) | |
| 382-601, gnl|tetNig1|chrUn_random (312182-312366) | |
| 382-601, gnl|tetNig1|chrUn_random (312151-312399) | |
| 382-601, gnl|xenTro1|scaffold_190 (806345-806161) | |
| 382-601, gnl|xenTro1|scaffold_190 (806383-806117) | |
| 768-964, gnl|bosTau2|chr27 (21187573-21187769) | |
| 768-964, gnl|canFam2|chr16 (30294900-30294714) | |
| 768-964, gnl|canFam2|chr3 (24767127-24766999) | |
| 768-964, gnl|danRer3|chrUn (27307228-27307042) | |
| 768-964, gnl|dasNov1|scaffold_17278 (20696-20510) | |
| 768-964, gnl|dasNov1|scaffold_17278 (20661-20515) | |
| 768-964, gnl|echTel1|scaffold_321713 (16582-16396) | |
| 768-964, gnl|echTel1|scaffold_321713 (16547-16401) | |
| 768-964, gnl|fr1|chrUn (54254260-54254074) | |
| 768-964, gnl|galGal2|chrUn (450595-450781) | |
| 768-964, gnl|hg17|chr22 (21019581-21019766) | |
| 768-964, gnl|hg17|chr5 (85734037-85734180) | |
| 768-964, gnl|Hg17|chr8 (38105431-38105627) | |
| 768-964, gnl|loxAfr1|scaffold_75330 (4120-4306) | |
| 768-964, gnl|loxAfr1|scaffold_75330 (4155-4301) | |
| 768-964, gnl|mm7|chr8 (24579370-24579188) | |
| 768-964, gnl|mm7|chr8 (24579339-24579192) | |
| 768-964, gnl|Mm7|chr8 (24579379-24579183) | |
| 768-964, gnl|monDom2|scaffold_1 (84787129-84786989) | |
| 768-964, gnl|oryCun1|scaffold_213923 (2824-2639) | |
| 768-964, gnl|oryCun1|scaffold_213923 (2793-2643) | |
| 768-964, gnl|panTro1|chr23 (21130338-21130523) | |
| 768-964, gnl|panTro1|chr4 (29498243-29498100) | |
| 768-964, gnl|rheMac2|chr10 (66250504-66250689) | |
| 768-964, gnl|rheMac2|chr6 (82631203-82631343) | |
| 768-964, gnl|rn3|chr16 (70633633-70633815) | |
| 768-964, gnl|rn3|chr16 (70633664-70633810) | |
| 768-964, gnl|tetNig1|chrUn_random (313083-313269) | |
| 768-964, gnl|tetNig1|chrUn_random (313123-313265) | |
| 768-964, gnl|xenTro1|scaffold_190 (805572-805386) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| cst (0.140036) |