Non-Coding RNA Search

Ss1.1-Ova1-OVRM10220E02.5

Sequence:


               
               AAAGACTGTCAAATGAACTTTTACAGAATGCATTAAAAAAAAAAAAACTCCTGTGTCGGT
CAGAACAACTTGCTACTTATCATTTTTGTATAAAAAGGAAATTAGTCTTTTTCTTTTTTT
GGTAAATTTTTGAAAAATATTGCTAAAAGTGCATTTAAGGAGATTGGGAGAAAATTAGCA
GAATGGAGAGAGTAAGTCTTTTTTTTTTTTCCAAATTATTAATTGTCCTGTGTCTATGTA
CCTCTAGCTGTTCTTTTTTTGTACTTTTCTGGTTCCAAACCAGTTTATTCTGTGGTTCTA
TAATAAGTTTTGATATAATCTTGGCTTCTTAAAAACTGTGTATCCTTAAAATATATGTTC
TGCAAGAATTAAAACTGAGTCCATGAAAATATCATAGGAAGACATAAAACTTTAAAAGGC
AACTCAAAGATGATGGAAACGCACTTACAAGTGGTGACCAAAAATTTTAGGTGAAGTTGA
GCACTCTAATTTGAGAACTGGAGGAACCACATACAACACTTAACTCCCCTTACCCTGCCC
CCCCCCAAAAAAAATAGACACCATGACAAACCTAGCTTTTTAAAAATATTTTAAGAAAGA
GAAATGAACTGTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGACACATGCTGAGGTT
TTGAATAAAAAGTGAACTTTTGTAATTTGAATTGGGTCCCGCTTAGTTCTTGAATTGTTA
TGAAAATCCTATATCTGTTTGTATATTTGCAAACCCTTTGTATTATAATTGTTGATATTT
TCCCTTTTTAAAAAATACCATTGAAATCAGCATGACAAAATAACACTGTTGGCACTTATA
GGTAACGTGATTGATTCAGTATCTTAGAGTTTACAGTTTGTGTTTTAAAAAAACTGAAGG
TTTTTTTTTAAGAGTGCAACATTTCTGTATACTGTAAAAGTTATAATAACTGAACTGTTT
GGTCGAGTCTTTGTGTGTTATATTCCAAGGAAAATTGAAAGTATTCAGAAATTAAAATAT
TATTTGATATCTGAAACCTGTTTGGCTGTCCCCACTCACTGTCTTTCCATGGAGAAGCCC
CTGTGAGCTCTCGCTAAGCTGGGCCTGGGGCTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACTGTCAAATGAACTTTTACAGAATGCATTAAAAAAAAAAAAACTCCTGTGTCGGT
CAGAACAACTTGCTACTTATCATTTTTGTATAAAAAGGAAATTAGTCTTTTTCTTTTTTT
GGTAAATTTTTGAAAAATATTGCTAAAAGTGCATTTAAGGAGATTGGGAGAAAATTAGCA
GAATGGAGAGAGTAAGTCTTTTTTTTTTTTCCAAATTATTAATTGTCCTGTGTCTATGTA
CCTCTAGCTGTTCTTTTTTTGTACTTTTCTGGTTCCAAACCAGTTTATTCTGTGGTTCTA
TAATAAGTTTTGATATAATCTTGGCTTCTTAAAAACTGTGTATCCTTAAAATATATGTTC
TGCAAGAATTAAAACTGAGTCCATGAAAATATCATAGGAAGACATAAAACTTTAAAAGGC
AACTCAAAGATGATGGAAACGCACTTACAAGTGGTGACCAAAAATTTTAGGTGAAGTTGA
GCACTCTAATTTGAGAACTGGAGGAACCACATACAACACTTAACTCCCCTTACCCTGCCC
CCCCCCAAAAAAAATAGACACCATGACAAACCTAGCTTTTTAAAAATATTTTAAGAAAGA
GAAATGAACTGTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGACACATGCTGAGGTT
TTGAATAAAAAGTGAACTTTTGTAATTTGAATTGGGTCCCGCTTAGTTCTTGAATTGTTA
TGAAAATCCTATATCTGTTTGTATATTTGCAAACCCTTTGTATTATAATTGTTGATATTT
TCCCTTTTTAAAAAATACCATTGAAATCAGCATGACAAAATAACACTGTTGGCACTTATA
GGTAACGTGATTGATTCAGTATCTTAGAGTTTACAGTTTGTGTTTTAAAAAAACTGAAGG
TTTTTTTTTAAGAGTGCAACATTTCTGTATACTGTAAAAGTTATAATAACTGAACTGTTT
GGTCGAGTCTTTGTGTGTTATATTCCAAGGAAAATTGAAAGTATTCAGAAATTAAAATAT
TATTTGATATCTGAAACCTGTTTGGCTGTCCCCACTCACTGTCTTTCCATGGAGAAGCCC
CTGTGAGCTCTCGCTAAGCTGGGCCTGGGGCTCTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               831-983, - strand, RNAz p=0.958185
               

               
               1000-1113, + strand, RNAz p=0.516956

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               831-983, - strand, RNAz p=0.958185
               

               
               1000-1113, + strand, RNAz p=0.516956

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               913-993, + strand, RNAmicro p=0.995015

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               913-993, + strand, RNAmicro p=0.995015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1113, gnl|bosTau2|chr21 (5752742-5753867)
               

               
               1-1113, gnl|Hg17|chr15 (94682021-94683126)
               

               
               1-1113, gnl|Mm7|chr7 (66210216-66209094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1113, gnl|bosTau2|chr21 (5752742-5753867)
               

               
               1-1113, gnl|Hg17|chr15 (94682021-94683126)
               

               
               1-1113, gnl|Mm7|chr7 (66210216-66209094)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               kid (0.389206)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	831-983, - strand, RNAz p=0.958185
	1000-1113, + strand, RNAz p=0.516956

	1-1113, gnl\|bosTau2\|chr21 (5752742-5753867)
	1-1113, gnl\|Hg17\|chr15 (94682021-94683126)
	1-1113, gnl\|Mm7\|chr7 (66210216-66209094)

	kid (0.389206)
	fli (0.202881)
	col (0.195008)
	eye (0.170503)
	fhi (0.169578)
	eli (0.151814)
	lin (0.145603)
	hlv (0.139256)
	ebs (0.118301)
	spc (0.113366)
	eje (0.0988338)