Non-Coding RNA Search

Ss1.1-Ova1-OVRM10221F12.5

Sequence:


               
               CGATGGTGTCCCCACGGGATCAAATTTCAGCGTCATAGCTGGGGACTGGCTTCGCGGTCC
CTGATGGGAGAGCATGAGCAGGTGCAACCCTCTTCTGGTTGGCCTACCCCTGGACCCTGA
CTATTCGGTGCCTCGCTACTGTTCACCTTCCTCACCTTCCAACGTGTGTTTGTCTGCTAA
CAAGAAGTGTGACAAGTGCTGTGAAAAGACCTTGGAATATACATTTCACTGGTCCAGGAC
CCCGGAGGCAGAGACCTTGGAGCCAGCTGCACCTGAGAACACAGCAACGGTTGAAGCCCG
GAGGCCAGGGAGGGACTCAGGGCCTCAGTCACATGGGTCTCCCCCGCTCCCCAGTTCAGA
CTCACCAGAGCACTGTAATGACCAGGACCTTCCGAAGAGGAATCCCAGCAACACTAAGAA
GCCCTTGGAGACCTGCTCTTCTAAAACCAAAGTTAAGTCCACAGTAATGATTCCCGACTG
CCAGAAGCTTCTGAGATGTGAACTGGAGTCACTCAAGAGCCAGCTACAGGCCCAGACCAA
GGCTTTCGAGTTCCTAAACCACTCAGTGACTCTGTTGGAGAAGGAGAGCTGCCTGCAGCA
AATCAAGATCCAACAGCTGGAAGAGGTTCTGGGCCCCACCAGCCGCCAGACAGACAAAGA
GGAACACAAGTGGGATGTGGAGGAGGGACGGCAGGAGCTATATGGGGCCCTGGCTCAAGG
CCTGCAGGGGCTGCAGAAGACCCTGCGCGACAATGAGGAGGTACAGCGGGCCCGAACCAC
CCGCTGCCTGCAGCTGCTGGCCCAGGAGATCCGGGACAGAGGCGCAGGAAGAGGAGATCA
CGGAGAACCTGGTGAACATCCAAAAGATGCAGAAGACACAGGTGAAGTGCCGCAAGGTCC
TGACCAAGATGAAGCAGCAGGGGTATGAGACATCCAACTGGCCGGAGCCTAAGGAGTTGC
CACCAGGAGGCAGTGGCTCCTGGAGGGATGACCTCCAGAAAGAGCTGGGTGACATATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATGGTGTCCCCACGGGATCAAATTTCAGCGTCATAGCTGGGGACTGGCTTCGCGGTCC
CTGATGGGAGAGCATGAGCAGGTGCAACCCTCTTCTGGTTGGCCTACCCCTGGACCCTGA
CTATTCGGTGCCTCGCTACTGTTCACCTTCCTCACCTTCCAACGTGTGTTTGTCTGCTAA
CAAGAAGTGTGACAAGTGCTGTGAAAAGACCTTGGAATATACATTTCACTGGTCCAGGAC
CCCGGAGGCAGAGACCTTGGAGCCAGCTGCACCTGAGAACACAGCAACGGTTGAAGCCCG
GAGGCCAGGGAGGGACTCAGGGCCTCAGTCACATGGGTCTCCCCCGCTCCCCAGTTCAGA
CTCACCAGAGCACTGTAATGACCAGGACCTTCCGAAGAGGAATCCCAGCAACACTAAGAA
GCCCTTGGAGACCTGCTCTTCTAAAACCAAAGTTAAGTCCACAGTAATGATTCCCGACTG
CCAGAAGCTTCTGAGATGTGAACTGGAGTCACTCAAGAGCCAGCTACAGGCCCAGACCAA
GGCTTTCGAGTTCCTAAACCACTCAGTGACTCTGTTGGAGAAGGAGAGCTGCCTGCAGCA
AATCAAGATCCAACAGCTGGAAGAGGTTCTGGGCCCCACCAGCCGCCAGACAGACAAAGA
GGAACACAAGTGGGATGTGGAGGAGGGACGGCAGGAGCTATATGGGGCCCTGGCTCAAGG
CCTGCAGGGGCTGCAGAAGACCCTGCGCGACAATGAGGAGGTACAGCGGGCCCGAACCAC
CCGCTGCCTGCAGCTGCTGGCCCAGGAGATCCGGGACAGAGGCGCAGGAAGAGGAGATCA
CGGAGAACCTGGTGAACATCCAAAAGATGCAGAAGACACAGGTGAAGTGCCGCAAGGTCC
TGACCAAGATGAAGCAGCAGGGGTATGAGACATCCAACTGGCCGGAGCCTAAGGAGTTGC
CACCAGGAGGCAGTGGCTCCTGGAGGGATGACCTCCAGAAAGAGCTGGGTGACATATGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51474970|ref|XP_496289.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51474970|ref|XP_496289.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               648-819, + strand, RNAz p=0.75789

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               648-819, + strand, RNAz p=0.75789

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               203-418, gnl|bosTau2|chr7 (11210009-11210224)
               

               
               203-418, gnl|Hg17|chr19 (11320653-11320871)
               

               
               203-418, gnl|Mm7|chr9 (21807738-21807963)
               


               
               610-819, gnl|bosTau2|chr7 (11211731-11211941)
               

               
               610-819, gnl|Hg17|chr19 (11322469-11322679)
               

               
               610-819, gnl|Mm7|chr9 (21811208-21811409)
               


               
               895-1020, gnl|bosTau2|chr7 (11213109-11213234)
               

               
               895-1020, gnl|canFam2|chr20 (52969295-52969068)
               

               
               895-1020, gnl|echTel1|scaffold_208968 (2856-2654)
               

               
               895-1020, gnl|hg17|chr19 (11325115-11325335)
               

               
               895-1020, gnl|Hg17|chr19 (11325125-11325250)
               

               
               895-1020, gnl|mm7|chr9 (21812523-21812728)
               

               
               895-1020, gnl|Mm7|chr9 (21812535-21812654)
               

               
               895-1020, gnl|monDom2|scaffold_106 (3385921-3386130)
               

               
               895-1020, gnl|panTro1|chr20 (11727459-11727679)
               

               
               895-1020, gnl|rheMac2|chr19 (11175237-11175457)
               

               
               895-1020, gnl|rn3|chr8 (21036860-21037068)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-418, gnl|bosTau2|chr7 (11210009-11210224)
               

               
               203-418, gnl|Hg17|chr19 (11320653-11320871)
               

               
               203-418, gnl|Mm7|chr9 (21807738-21807963)
               


               
               610-819, gnl|bosTau2|chr7 (11211731-11211941)
               

               
               610-819, gnl|Hg17|chr19 (11322469-11322679)
               

               
               610-819, gnl|Mm7|chr9 (21811208-21811409)
               


               
               895-1020, gnl|bosTau2|chr7 (11213109-11213234)
               

               
               895-1020, gnl|canFam2|chr20 (52969295-52969068)
               

               
               895-1020, gnl|echTel1|scaffold_208968 (2856-2654)
               

               
               895-1020, gnl|hg17|chr19 (11325115-11325335)
               

               
               895-1020, gnl|Hg17|chr19 (11325125-11325250)
               

               
               895-1020, gnl|mm7|chr9 (21812523-21812728)
               

               
               895-1020, gnl|Mm7|chr9 (21812535-21812654)
               

               
               895-1020, gnl|monDom2|scaffold_106 (3385921-3386130)
               

               
               895-1020, gnl|panTro1|chr20 (11727459-11727679)
               

               
               895-1020, gnl|rheMac2|chr19 (11175237-11175457)
               

               
               895-1020, gnl|rn3|chr8 (21036860-21037068)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	203-418, gnl\|bosTau2\|chr7 (11210009-11210224)
	203-418, gnl\|Hg17\|chr19 (11320653-11320871)
	203-418, gnl\|Mm7\|chr9 (21807738-21807963)

	610-819, gnl\|bosTau2\|chr7 (11211731-11211941)
	610-819, gnl\|Hg17\|chr19 (11322469-11322679)
	610-819, gnl\|Mm7\|chr9 (21811208-21811409)

	895-1020, gnl\|bosTau2\|chr7 (11213109-11213234)
	895-1020, gnl\|canFam2\|chr20 (52969295-52969068)
	895-1020, gnl\|echTel1\|scaffold_208968 (2856-2654)
	895-1020, gnl\|hg17\|chr19 (11325115-11325335)
	895-1020, gnl\|Hg17\|chr19 (11325125-11325250)
	895-1020, gnl\|mm7\|chr9 (21812523-21812728)
	895-1020, gnl\|Mm7\|chr9 (21812535-21812654)
	895-1020, gnl\|monDom2\|scaffold_106 (3385921-3386130)
	895-1020, gnl\|panTro1\|chr20 (11727459-11727679)
	895-1020, gnl\|rheMac2\|chr19 (11175237-11175457)
	895-1020, gnl\|rn3\|chr8 (21036860-21037068)