Non-Coding RNA Search

Ss1.1-Ova1-OVRM10225E11.5

Sequence:


               
               TGTGTGTGTGTGAGAGAGAATATGTGCATGCGCACGCGTGTCCCTGGGAGAGTGGAGGCT
CTTTCACCGATTAGAGCCAGCGCTGAGAGGCAGCACTGCTCCTTCTCTCACACCAACCGA
GTCTCTTGATCTGTACGTGCAATCCCAGGCAGCTCTGGAGCACAAAGCCTGGGCCAGCTG
CCTGCTGCCGCCGCCTCTGCGCGCCCAGTACTTTTTATGCACCACACTCACCGCCTCCTT
CGCTCTGCGTCCTGAAAAGTGCGACTGGTCTCCGAAGGAATCTCCATGGAAAGTAGAGAC
CAGAAAGGGGTGTGGATGTGTGTGTGGACGCCAGATGGGTGGGTGCGAGTGTGGCCGGTT
GCTCAGGAACCTGGCTAACTTTCCAGGTCCGTTTCCTGGGGATTCGGGCAGCTCCCCCCA
CCGCTGCCCCCAGGCAGGCGCAGGGGCAGGGGCAGGAGCAGGAGCAGAGATCTGAACAGC
TTGCCTCCTGTAGCCCTGCTTGTTTTGTGCCTGTCAGTGAGGAGCTGCTTCGGAGCCTTG
GAACCAGCCCTGGACCCACTTTCGGAGCATCCATGTTGGCACGACCATTAATCTGACTTG
GAAACAGCCAGGAACAGGATTCCCAGACTCGTCAGGCTCACTGGCTGTCCTTGGCAGATC
ATTCCCTGCACTGCTATAACTTGACAGGAAAGTTATTTAAAATTTGGAGGAGAGAAAAAT
CCTTTAATGTGAGCTACATAATCTGGNTATTTAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGTGTGTGAGAGAGAATATGTGCATGCGCACGCGTGTCCCTGGGAGAGTGGAGGCT
CTTTCACCGATTAGAGCCAGCGCTGAGAGGCAGCACTGCTCCTTCTCTCACACCAACCGA
GTCTCTTGATCTGTACGTGCAATCCCAGGCAGCTCTGGAGCACAAAGCCTGGGCCAGCTG
CCTGCTGCCGCCGCCTCTGCGCGCCCAGTACTTTTTATGCACCACACTCACCGCCTCCTT
CGCTCTGCGTCCTGAAAAGTGCGACTGGTCTCCGAAGGAATCTCCATGGAAAGTAGAGAC
CAGAAAGGGGTGTGGATGTGTGTGTGGACGCCAGATGGGTGGGTGCGAGTGTGGCCGGTT
GCTCAGGAACCTGGCTAACTTTCCAGGTCCGTTTCCTGGGGATTCGGGCAGCTCCCCCCA
CCGCTGCCCCCAGGCAGGCGCAGGGGCAGGGGCAGGAGCAGGAGCAGAGATCTGAACAGC
TTGCCTCCTGTAGCCCTGCTTGTTTTGTGCCTGTCAGTGAGGAGCTGCTTCGGAGCCTTG
GAACCAGCCCTGGACCCACTTTCGGAGCATCCATGTTGGCACGACCATTAATCTGACTTG
GAAACAGCCAGGAACAGGATTCCCAGACTCGTCAGGCTCACTGGCTGTCCTTGGCAGATC
ATTCCCTGCACTGCTATAACTTGACAGGAAAGTTATTTAAAATTTGGAGGAGAGAAAAAT
CCTTTAATGTGAGCTACATAATCTGGNTATTTAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-111, + strand, RNAz p=0.861812

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, + strand, RNAz p=0.861812

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018150, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018150, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-205, gnl|bosTau2|chr3 (70782662-70782865)
               

               
               1-205, gnl|Hg17|chr1 (44539959-44540177)
               

               
               1-205, gnl|Mm7|chr4 (116873460-116873236)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-205, gnl|bosTau2|chr3 (70782662-70782865)
               

               
               1-205, gnl|Hg17|chr1 (44539959-44540177)
               

               
               1-205, gnl|Mm7|chr4 (116873460-116873236)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	1-205, gnl\|bosTau2\|chr3 (70782662-70782865)
	1-205, gnl\|Hg17\|chr1 (44539959-44540177)
	1-205, gnl\|Mm7\|chr4 (116873460-116873236)