Non-Coding RNA Search

Ss1.1-Ova2-C0003263_I14.5

Sequence:


               
               GACTAGGAAAAATTATGCATCTAGCACATTTAAATTGTGCAGATATGAAAATTTTTCAAG
GATTACATTTTATCCGAAGACTGCATATTTTAACTGGCTTTAAAACTGTAACACACCACA
TAAAGGATATTTTACCAGGTATGTATTGCATTATATCATTGCAATAATTATTGGAAGTCT
AGATATCGAGCCATCCCAGGTGTTGGGGGGTGGGGGAGGGTTGTGGCAAGATTGTCTTTT
CAATTTTGGAGAGTTTTCCTGTGGCTACAAGGCAAGTAACGGGTTGGAAAACGTCTGACT
GTAAGTGTTGGACACCTTCATAGTGTAGTGTTTTAGTGACTTTTTTATACGGTTCTTGTA
CATTATATACGTGTAGTGGTGTTTCAGAATGTTTGTTTATGCACTAGTTCAGACAACTTT
CCCTGTTACTTGTTCTTGATAAGTGAAACCTGCAGGGAAATAAAAAATACATATCAAAAC
ACGGCCATGCTGCATATGTGTTTATTTCACCATGTGCACACAGTGTGAGCGAGGACAGGA
GGGACAGGCCGGCACGTGCAGCACATGTCCCCCCAGGCTTTCCTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTAGGAAAAATTATGCATCTAGCACATTTAAATTGTGCAGATATGAAAATTTTTCAAG
GATTACATTTTATCCGAAGACTGCATATTTTAACTGGCTTTAAAACTGTAACACACCACA
TAAAGGATATTTTACCAGGTATGTATTGCATTATATCATTGCAATAATTATTGGAAGTCT
AGATATCGAGCCATCCCAGGTGTTGGGGGGTGGGGGAGGGTTGTGGCAAGATTGTCTTTT
CAATTTTGGAGAGTTTTCCTGTGGCTACAAGGCAAGTAACGGGTTGGAAAACGTCTGACT
GTAAGTGTTGGACACCTTCATAGTGTAGTGTTTTAGTGACTTTTTTATACGGTTCTTGTA
CATTATATACGTGTAGTGGTGTTTCAGAATGTTTGTTTATGCACTAGTTCAGACAACTTT
CCCTGTTACTTGTTCTTGATAAGTGAAACCTGCAGGGAAATAAAAAATACATATCAAAAC
ACGGCCATGCTGCATATGTGTTTATTTCACCATGTGCACACAGTGTGAGCGAGGACAGGA
GGGACAGGCCGGCACGTGCAGCACATGTCCCCCCAGGCTTTCCTGGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.683659
               

               
               359-532, + strand, RNAz p=0.971614

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.683659
               

               
               359-532, + strand, RNAz p=0.971614

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               367-532, UI-R-C3-sp-g-10-0-UI.s1 UI-R-C3 Rattus norvegicus cDNA clone 
(gb|AI535147.1|), blast E-value=0, identity=100% 
               

               
               362-523, UI-M-EM0-bvi-b-10-0-UI.r1 NIH_BMAP_EM0 Mus musculus cDNA clone 
(gb|BM946262.1|), blast E-value=0, identity=98.77% 
               

               
               362-523, lac71h08.y1 SiEP Mus musculus cDNA 5', mRNA sequence (gb|CF379783.1|), 
blast E-value=0, identity=97.53% 
               

               
               359-532, AGENCOURT_26625006 NIH_MGC_253 Rattus norvegicus cDNA clone 
(gb|CO382786.1|), blast E-value=0, identity=99.43% 
               

               
               362-523, S26-20899 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence 
(gb|DT904895.1|), blast E-value=0, identity=98.77% 
               

               
               362-523, BMSB14667 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence 
(gb|DT914129.1|), blast E-value=0, identity=98.77%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               367-532, UI-R-C3-sp-g-10-0-UI.s1 UI-R-C3 Rattus norvegicus cDNA clone 
(gb|AI535147.1|), blast E-value=0, identity=100% 
               

               
               362-523, UI-M-EM0-bvi-b-10-0-UI.r1 NIH_BMAP_EM0 Mus musculus cDNA clone 
(gb|BM946262.1|), blast E-value=0, identity=98.77% 
               

               
               362-523, lac71h08.y1 SiEP Mus musculus cDNA 5', mRNA sequence (gb|CF379783.1|), 
blast E-value=0, identity=97.53% 
               

               
               359-532, AGENCOURT_26625006 NIH_MGC_253 Rattus norvegicus cDNA clone 
(gb|CO382786.1|), blast E-value=0, identity=99.43% 
               

               
               362-523, S26-20899 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence 
(gb|DT904895.1|), blast E-value=0, identity=98.77% 
               

               
               362-523, BMSB14667 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence 
(gb|DT914129.1|), blast E-value=0, identity=98.77%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015630, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015630, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-532, gnl|bosTau2|chr2 (33455336-33455865)
               

               
               1-532, gnl|Hg17|chr2 (149378389-149378919)
               

               
               1-532, gnl|Mm7|chr2 (49558021-49558546)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr2 (33455336-33455865)
               

               
               1-532, gnl|Hg17|chr2 (149378389-149378919)
               

               
               1-532, gnl|Mm7|chr2 (49558021-49558546)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               ret (0.128733)

	120-239, - strand, RNAz p=0.683659
	359-532, + strand, RNAz p=0.971614

	367-532, UI-R-C3-sp-g-10-0-UI.s1 UI-R-C3 Rattus norvegicus cDNA clone (gb\|AI535147.1\|), blast E-value=0, identity=100%
	362-523, UI-M-EM0-bvi-b-10-0-UI.r1 NIH_BMAP_EM0 Mus musculus cDNA clone (gb\|BM946262.1\|), blast E-value=0, identity=98.77%
	362-523, lac71h08.y1 SiEP Mus musculus cDNA 5', mRNA sequence (gb\|CF379783.1\|), blast E-value=0, identity=97.53%
	359-532, AGENCOURT_26625006 NIH_MGC_253 Rattus norvegicus cDNA clone (gb\|CO382786.1\|), blast E-value=0, identity=99.43%
	362-523, S26-20899 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence (gb\|DT904895.1\|), blast E-value=0, identity=98.77%
	362-523, BMSB14667 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence (gb\|DT914129.1\|), blast E-value=0, identity=98.77%

	1-532, gnl\|bosTau2\|chr2 (33455336-33455865)
	1-532, gnl\|Hg17\|chr2 (149378389-149378919)
	1-532, gnl\|Mm7\|chr2 (49558021-49558546)