Ss1.1-Ova2-C0003263_I14.5
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GACTAGGAAAAATTATGCATCTAGCACATTTAAATTGTGCAGATATGAAAATTTTTCAAG
GATTACATTTTATCCGAAGACTGCATATTTTAACTGGCTTTAAAACTGTAACACACCACA
TAAAGGATATTTTACCAGGTATGTATTGCATTATATCATTGCAATAATTATTGGAAGTCT
AGATATCGAGCCATCCCAGGTGTTGGGGGGTGGGGGAGGGTTGTGGCAAGATTGTCTTTT
CAATTTTGGAGAGTTTTCCTGTGGCTACAAGGCAAGTAACGGGTTGGAAAACGTCTGACT
GTAAGTGTTGGACACCTTCATAGTGTAGTGTTTTAGTGACTTTTTTATACGGTTCTTGTA
CATTATATACGTGTAGTGGTGTTTCAGAATGTTTGTTTATGCACTAGTTCAGACAACTTT
CCCTGTTACTTGTTCTTGATAAGTGAAACCTGCAGGGAAATAAAAAATACATATCAAAAC
ACGGCCATGCTGCATATGTGTTTATTTCACCATGTGCACACAGTGTGAGCGAGGACAGGA
GGGACAGGCCGGCACGTGCAGCACATGTCCCCCCAGGCTTTCCTGGCA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GACTAGGAAAAATTATGCATCTAGCACATTTAAATTGTGCAGATATGAAAATTTTTCAAG
GATTACATTTTATCCGAAGACTGCATATTTTAACTGGCTTTAAAACTGTAACACACCACA
TAAAGGATATTTTACCAGGTATGTATTGCATTATATCATTGCAATAATTATTGGAAGTCT
AGATATCGAGCCATCCCAGGTGTTGGGGGGTGGGGGAGGGTTGTGGCAAGATTGTCTTTT
CAATTTTGGAGAGTTTTCCTGTGGCTACAAGGCAAGTAACGGGTTGGAAAACGTCTGACT
GTAAGTGTTGGACACCTTCATAGTGTAGTGTTTTAGTGACTTTTTTATACGGTTCTTGTA
CATTATATACGTGTAGTGGTGTTTCAGAATGTTTGTTTATGCACTAGTTCAGACAACTTT
CCCTGTTACTTGTTCTTGATAAGTGAAACCTGCAGGGAAATAAAAAATACATATCAAAAC
ACGGCCATGCTGCATATGTGTTTATTTCACCATGTGCACACAGTGTGAGCGAGGACAGGA
GGGACAGGCCGGCACGTGCAGCACATGTCCCCCCAGGCTTTCCTGGCA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
367-532, UI-R-C3-sp-g-10-0-UI.s1 UI-R-C3 Rattus norvegicus cDNA clone
(gb|AI535147.1|), blast E-value=0, identity=100% |
|
362-523, UI-M-EM0-bvi-b-10-0-UI.r1 NIH_BMAP_EM0 Mus musculus cDNA clone
(gb|BM946262.1|), blast E-value=0, identity=98.77% |
|
362-523, lac71h08.y1 SiEP Mus musculus cDNA 5', mRNA sequence (gb|CF379783.1|),
blast E-value=0, identity=97.53% |
|
359-532, AGENCOURT_26625006 NIH_MGC_253 Rattus norvegicus cDNA clone
(gb|CO382786.1|), blast E-value=0, identity=99.43% |
|
362-523, S26-20899 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence
(gb|DT904895.1|), blast E-value=0, identity=98.77% |
|
362-523, BMSB14667 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence
(gb|DT914129.1|), blast E-value=0, identity=98.77% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
367-532, UI-R-C3-sp-g-10-0-UI.s1 UI-R-C3 Rattus norvegicus cDNA clone
(gb|AI535147.1|), blast E-value=0, identity=100% |
|
362-523, UI-M-EM0-bvi-b-10-0-UI.r1 NIH_BMAP_EM0 Mus musculus cDNA clone
(gb|BM946262.1|), blast E-value=0, identity=98.77% |
|
362-523, lac71h08.y1 SiEP Mus musculus cDNA 5', mRNA sequence (gb|CF379783.1|),
blast E-value=0, identity=97.53% |
|
359-532, AGENCOURT_26625006 NIH_MGC_253 Rattus norvegicus cDNA clone
(gb|CO382786.1|), blast E-value=0, identity=99.43% |
|
362-523, S26-20899 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence
(gb|DT904895.1|), blast E-value=0, identity=98.77% |
|
362-523, BMSB14667 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence
(gb|DT914129.1|), blast E-value=0, identity=98.77% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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bfe (0.149858) |
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ret (0.128733) |
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bfe (0.149858) |
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ret (0.128733) |