Non-Coding RNA Search

Ss1.1-OvaF-UMC-pfeto1-010-e10.3

Sequence:


               
               GGTCCCAGCAGGAAGGGAGGGCCGGCGAGGCCCTTTTTGGCCCCTGGCTGGGGGAGGCAA
GGAGCTAGAGCAGGGACCAGGTGGACAAAAAGCGCCCGCCGGGGGTCAGGGCTTCGCCAC
AGGGCCCCCCCGCGTCCGCAGCCCCAGTCCTTCCCCGCCCAGGTGCCATTTCTTCTCTGC
GAAGGCCTCTGCCCAGGCCCCCAGTCCGCCCCTCGTGGCCAGAGCCCAGTTCAAGCCCCC
CAGTGCCTCCTTGTGCATAGACCCTCCGCCCGCCCCCGGCCCGCCCAGTAGGTAGAGCCC
CTTCCCTCGTCCGGCTGGTGTACAGTAGCCACTAGTGTAGTGCGGCGTGCTTCCCCGGGA
CGGCGAGCGGGCCGCGGGCGGCCGGCCCCGCGCCGCCGCCGGTCCCCGAATCTGCCCGCA
GCGGCCCGTGCTGTGTTTCGTGCTGTGTCCTCGCGCTGCGGCCACCCCCTCCCGCGTACT
GACTCCTATAAGCGCTTCTCTTGCATAGTCACGTAGCCCCCACTCCCTTCCCAGGTCTCA
CGCAAGTTTTATACTCTAATATTTATATGGCTTTTTTTTCTTTGAAAAAAAATTAAACGG
TTTCTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCCAGCAGGAAGGGAGGGCCGGCGAGGCCCTTTTTGGCCCCTGGCTGGGGGAGGCAA
GGAGCTAGAGCAGGGACCAGGTGGACAAAAAGCGCCCGCCGGGGGTCAGGGCTTCGCCAC
AGGGCCCCCCCGCGTCCGCAGCCCCAGTCCTTCCCCGCCCAGGTGCCATTTCTTCTCTGC
GAAGGCCTCTGCCCAGGCCCCCAGTCCGCCCCTCGTGGCCAGAGCCCAGTTCAAGCCCCC
CAGTGCCTCCTTGTGCATAGACCCTCCGCCCGCCCCCGGCCCGCCCAGTAGGTAGAGCCC
CTTCCCTCGTCCGGCTGGTGTACAGTAGCCACTAGTGTAGTGCGGCGTGCTTCCCCGGGA
CGGCGAGCGGGCCGCGGGCGGCCGGCCCCGCGCCGCCGCCGGTCCCCGAATCTGCCCGCA
GCGGCCCGTGCTGTGTTTCGTGCTGTGTCCTCGCGCTGCGGCCACCCCCTCCCGCGTACT
GACTCCTATAAGCGCTTCTCTTGCATAGTCACGTAGCCCCCACTCCCTTCCCAGGTCTCA
CGCAAGTTTTATACTCTAATATTTATATGGCTTTTTTTTCTTTGAAAAAAAATTAAACGG
TTTCTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.50795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.50795

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               75-181, - strand, RNAmicro p=0.917825

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               75-181, - strand, RNAmicro p=0.917825

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018929, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018929, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-267, gnl|bosTau2|chr7 (35337418-35337688)
               

               
               1-267, gnl|Hg17|chr5 (140872046-140872314)
               

               
               1-267, gnl|Mm7|chr18 (38217455-38217718)
               


               
               428-631, gnl|bosTau2|chr13 (33883394-33883186)
               

               
               428-631, gnl|Mm7|chr18 (38217882-38218077)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr7 (35337418-35337688)
               

               
               1-267, gnl|Hg17|chr5 (140872046-140872314)
               

               
               1-267, gnl|Mm7|chr18 (38217455-38217718)
               


               
               428-631, gnl|bosTau2|chr13 (33883394-33883186)
               

               
               428-631, gnl|Mm7|chr18 (38217882-38218077)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               eli (0.151814)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               eli (0.151814)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	1-267, gnl\|bosTau2\|chr7 (35337418-35337688)
	1-267, gnl\|Hg17\|chr5 (140872046-140872314)
	1-267, gnl\|Mm7\|chr18 (38217455-38217718)

	428-631, gnl\|bosTau2\|chr13 (33883394-33883186)
	428-631, gnl\|Mm7\|chr18 (38217882-38218077)

	fbs (0.350693)
	eye (0.341006)
	hyp (0.285673)
	pty (0.285429)
	fce (0.271592)
	eli (0.151814)
	ecc (0.115035)
	jej (0.0989218)