Non-Coding RNA Search

Ss1.1-OvaF-UMC-pfeto1-013-f10.3

Sequence:


               
               ATATGTCTATGTGCTCATTGTCACGGAAGTGCTGGAAGACTGGGAAGATTCAGTTAACAT
CGGAAGGAAGAGGGAATGGTTTAAAATAGAAGATGCCATAAAAGTGTTGCAGTATCACAA
ACCGGTGCAGGCGTCGTATTTTGAAACGTTGAGGCAAGGCTACTCAGCCAACAACGGCAC
CCCGGTCGTGGCCACCACGTACTCAGTGTCTGCTCAGAGCTCGATGCCAGGCATTAGATG
ACTGAAGACTTCCTGTAAGAGAAATGGAAATTGGAAACTAGACTGAAGTGCAGATCTTCC
CTCTCACCCTTGCTCTTTTCACCTCTCCTCACAGGCCTCCTCTTTCAAATAAGGCATGAT
GGGCAGCAGAGAAAGGGTTTATTGATAACGTTGCTGTTTGGTGTTAAGTGATCGGGCTTT
TTCTTCTCTTTTTATTGAGGGGGTGGGGGTTGGGTATGTAATTTGTAAGTACTTTTGTGC
ATGATCTGTCTCCCTTTCCACACCCCTTCAATCCTCTGAAGAGGCAAACAGCCTTCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGTCTATGTGCTCATTGTCACGGAAGTGCTGGAAGACTGGGAAGATTCAGTTAACAT
CGGAAGGAAGAGGGAATGGTTTAAAATAGAAGATGCCATAAAAGTGTTGCAGTATCACAA
ACCGGTGCAGGCGTCGTATTTTGAAACGTTGAGGCAAGGCTACTCAGCCAACAACGGCAC
CCCGGTCGTGGCCACCACGTACTCAGTGTCTGCTCAGAGCTCGATGCCAGGCATTAGATG
ACTGAAGACTTCCTGTAAGAGAAATGGAAATTGGAAACTAGACTGAAGTGCAGATCTTCC
CTCTCACCCTTGCTCTTTTCACCTCTCCTCACAGGCCTCCTCTTTCAAATAAGGCATGAT
GGGCAGCAGAGAAAGGGTTTATTGATAACGTTGCTGTTTGGTGTTAAGTGATCGGGCTTT
TTCTTCTCTTTTTATTGAGGGGGTGGGGGTTGGGTATGTAATTTGTAAGTACTTTTGTGC
ATGATCTGTCTCCCTTTCCACACCCCTTCAATCCTCTGAAGAGGCAAACAGCCTTCCTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26348155|dbj|BAC37717.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26348155|dbj|BAC37717.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-177, gnl|bosTau2|chr17 (6863532-6863356)
               

               
               1-177, gnl|Hg17|chr1 (142628332-142628156)
               

               
               1-177, gnl|Mm7|chr16 (13414337-13414189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-177, gnl|bosTau2|chr17 (6863532-6863356)
               

               
               1-177, gnl|Hg17|chr1 (142628332-142628156)
               

               
               1-177, gnl|Mm7|chr16 (13414337-13414189)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

	1-177, gnl\|bosTau2\|chr17 (6863532-6863356)
	1-177, gnl\|Hg17\|chr1 (142628332-142628156)
	1-177, gnl\|Mm7\|chr16 (13414337-13414189)