Non-Coding RNA Search

Ss1.1-OvaN-UMC-pnatal4-016-e02.3

Sequence:


               
               CTGGTCTGAAGCCAGCCAAAATTCAAACCAGAAAGCCTAAGGCAAGAGGTGTAGCAAATG
GAGGAGATGCGACCCTGCAAAGGAAGAGAGTGAAGAGATCTCGGGGAAATGAAGCTGCAG
CTCCTCCTGTACCCTTAATGAGAAGGAAGGAAGGGCCTGGGAATTCAGATCCAGAGCAGC
CAGGCCCTAAGAAAAAATTTAAAGCTCCCCAAAGCAAGGTCTCACTAAGCAGCTCGTCTG
AGGAAAAAGAAGCTAGAATAGCGTCTGAGGGGCTGACTCCACCAGCTCCTTGTGGGGCCT
GTCCCGTGGTGGGGAAAGAGGGGCCTGAACCCCAGGAGCCACGGATTCTGGAGGCTGGAA
GTGTCCCCTCTGACGATGAAGCCTCCAGGGACCTGGACCTGGAGCAGCTCATGGAGGATG
TTGGAAAAGAGCCGGAGCCAAGGGAGGAGCCGCAGCGCAGAGACGCCGCAGGGGAGCTCG
CCATGGCCTTCTTTGAGGAATAGCCGTGTGCTCACACCTCCTCCCTGTGCTCTCACCCCT
TCCCCGGGAGCAGGAGGGCCGGCTCTCCCAGGGTCCCCGAGAGCCTGAGAAGTGTTGGGG
TTGTTCGTTCACAATGAGGTTAAATGGCGAAAGGCAGAGTTGTCCAGTTGATGTGTTAAT
AAACCAGGTTACTGATTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTCTGAAGCCAGCCAAAATTCAAACCAGAAAGCCTAAGGCAAGAGGTGTAGCAAATG
GAGGAGATGCGACCCTGCAAAGGAAGAGAGTGAAGAGATCTCGGGGAAATGAAGCTGCAG
CTCCTCCTGTACCCTTAATGAGAAGGAAGGAAGGGCCTGGGAATTCAGATCCAGAGCAGC
CAGGCCCTAAGAAAAAATTTAAAGCTCCCCAAAGCAAGGTCTCACTAAGCAGCTCGTCTG
AGGAAAAAGAAGCTAGAATAGCGTCTGAGGGGCTGACTCCACCAGCTCCTTGTGGGGCCT
GTCCCGTGGTGGGGAAAGAGGGGCCTGAACCCCAGGAGCCACGGATTCTGGAGGCTGGAA
GTGTCCCCTCTGACGATGAAGCCTCCAGGGACCTGGACCTGGAGCAGCTCATGGAGGATG
TTGGAAAAGAGCCGGAGCCAAGGGAGGAGCCGCAGCGCAGAGACGCCGCAGGGGAGCTCG
CCATGGCCTTCTTTGAGGAATAGCCGTGTGCTCACACCTCCTCCCTGTGCTCTCACCCCT
TCCCCGGGAGCAGGAGGGCCGGCTCTCCCAGGGTCCCCGAGAGCCTGAGAAGTGTTGGGG
TTGTTCGTTCACAATGAGGTTAAATGGCGAAAGGCAGAGTTGTCCAGTTGATGTGTTAAT
AAACCAGGTTACTGATTTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               261-380, - strand, RNAz p=0.63601

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-380, - strand, RNAz p=0.63601

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               182-679, gnl|bosTau2|chr25 (32545833-32546306)
               

               
               182-679, gnl|canFam2|chr6 (12278163-12277240)
               

               
               182-679, gnl|dasNov1|scaffold_23444 (10231-9349)
               

               
               182-679, gnl|echTel1|scaffold_314793 (20726-19846)
               

               
               182-679, gnl|hg17|chr7 (99642934-99643847)
               

               
               182-679, gnl|Hg17|chr7 (99643612-99643147)
               

               
               182-679, gnl|loxAfr1|scaffold_107535 (8-944)
               

               
               182-679, gnl|mm7|chr5 (136740790-136739934)
               

               
               182-679, gnl|Mm7|chr5 (136740154-136740616)
               

               
               182-679, gnl|panTro1|chr6 (101426751-101427664)
               

               
               182-679, gnl|rheMac2|chr3 (47571872-47572787)
               

               
               182-679, gnl|rn3|chr12 (19874532-19873685)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-679, gnl|bosTau2|chr25 (32545833-32546306)
               

               
               182-679, gnl|canFam2|chr6 (12278163-12277240)
               

               
               182-679, gnl|dasNov1|scaffold_23444 (10231-9349)
               

               
               182-679, gnl|echTel1|scaffold_314793 (20726-19846)
               

               
               182-679, gnl|hg17|chr7 (99642934-99643847)
               

               
               182-679, gnl|Hg17|chr7 (99643612-99643147)
               

               
               182-679, gnl|loxAfr1|scaffold_107535 (8-944)
               

               
               182-679, gnl|mm7|chr5 (136740790-136739934)
               

               
               182-679, gnl|Mm7|chr5 (136740154-136740616)
               

               
               182-679, gnl|panTro1|chr6 (101426751-101427664)
               

               
               182-679, gnl|rheMac2|chr3 (47571872-47572787)
               

               
               182-679, gnl|rn3|chr12 (19874532-19873685)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	182-679, gnl\|bosTau2\|chr25 (32545833-32546306)
	182-679, gnl\|canFam2\|chr6 (12278163-12277240)
	182-679, gnl\|dasNov1\|scaffold_23444 (10231-9349)
	182-679, gnl\|echTel1\|scaffold_314793 (20726-19846)
	182-679, gnl\|hg17\|chr7 (99642934-99643847)
	182-679, gnl\|Hg17\|chr7 (99643612-99643147)
	182-679, gnl\|loxAfr1\|scaffold_107535 (8-944)
	182-679, gnl\|mm7\|chr5 (136740790-136739934)
	182-679, gnl\|Mm7\|chr5 (136740154-136740616)
	182-679, gnl\|panTro1\|chr6 (101426751-101427664)
	182-679, gnl\|rheMac2\|chr3 (47571872-47572787)
	182-679, gnl\|rn3\|chr12 (19874532-19873685)