Ss1.1-OvaP-UMC-pputal1-003-h06.3
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AGCTTTGAGGGGGAGCGGCTGGCCTGGCAGGCGGAGAAGGAGCAGGTGATCCGCTACCAG
AAGCAGCTGCAGCACAACTACATCCAGATGTACCGACGCAACAGGCAGCTGGAGCAGGAG
CTACAGCAGCTCAGCCTGGAGCTGGAGGCCCGGGAACTCGCCGACCTGGGCCTGGCGGAG
CCAGCTCCCTGCATCTGCCTGGAGGAGATCACCGCCACCGAAATCTAGGGCCTTGGCATC
CAGCTCTGCGGGGGCTCTACTGAATAGGGGCAGTAGCCTCAGGTCTGAGGGCCCCAGAGC
CACTCAGTCCCTGGGATCCATGCCTCTGGGCCTCTGCCAAGGACTCGGGGCTGTGCTATG
AGTTAGATGAGCAAGATCAGACTCCTTGAGGATCCTTGTGTTCACTGTCACCCGCAGGCT
CCCACTCACTTGACCTGTTTCACTCCCAGCTGCTGCCATTGCCACTCTGCCAACCCTGTT
CACCCCAGGCACTCACCAGCCCACCCAGCCAGGGGGCTCGGGAGAGCAAGGGGCTCCCTC
ATCTCCAAATTCTCCCCCACCGCAAAGCCAGAGAGAGCCAGACAGCGCCAGCTGCTCCAG
ATGTGCCTGCCCCCCCGCGCCCATGTTAGGGGAACAGGGCTGGGACTGGGGTCTGATCCC
CAGACTCTAGCTCTGCAGCCTCCTGGGGTGAGGGGGCTGTAGTCAGACCAAAGGAAGAAC
TCACAAATGTCTTGTTTATTTGTGTTTGTGACCAAGTGGCCCCACACCCAGGTTTATGGC
GTCATTTTCACTTGTATATTTTTCACATTGTAAATTTCTTGTACAAACCCAAAGAAAAAA
TTAAAAAAAATTTTTTTTGTTTTTAAAAAATGATGAGTGTGCTGGATAAAGATTATGGGA
ACTTGTTTGGCCCCCACACCCTCTTTATTTGCAGGCTGTTCTCCTACCCCTCAGAGGACT
TGAGGGAGAAAGGGCGATGGAAGAGGACAGATCCAGCGGAAAGTGTGAGATTCTCGTGGA
CCACAACATGAAACGGTCCCTCAGGGTTTGAGAAAATAGGAAAGCCTCCTATCTTGTCCC
TTGCACAGAACATTACTGGGGGCTGGGTGCAGGGACCCTTTGAGGGCCCTAGCTGAGAGT
CTGTGTCCCTCACTTTTGGGGGAGATCACGAGAAAGTGCACACCAATCCCAAGCTCCAGA
CCTTGGGATTCTCCACCCACTTCCTGTCTTGGAAGGTTGGGGGAATGCGAGTGACACAGG
CTGCCCAGTAGCACCTTGTCCTTGACACCAAGTTTATCTGGAATGGGTAGAGCTTTAGTG
ACAACTGGGGAGGGAGAAAGTGGGGGAATCTTGAACCACCACTGTGAAGCTTCGGGAGTA
GACAAGGCAAGCGGGAGTGGAAGGTTCCTGAATCTTGAGAATGGTAGGTGAGGTGGAGGG
ATGGCAGGATTCTCTGGAGTCAGTAGGAAGAGTTCT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AGCTTTGAGGGGGAGCGGCTGGCCTGGCAGGCGGAGAAGGAGCAGGTGATCCGCTACCAG
AAGCAGCTGCAGCACAACTACATCCAGATGTACCGACGCAACAGGCAGCTGGAGCAGGAG
CTACAGCAGCTCAGCCTGGAGCTGGAGGCCCGGGAACTCGCCGACCTGGGCCTGGCGGAG
CCAGCTCCCTGCATCTGCCTGGAGGAGATCACCGCCACCGAAATCTAGGGCCTTGGCATC
CAGCTCTGCGGGGGCTCTACTGAATAGGGGCAGTAGCCTCAGGTCTGAGGGCCCCAGAGC
CACTCAGTCCCTGGGATCCATGCCTCTGGGCCTCTGCCAAGGACTCGGGGCTGTGCTATG
AGTTAGATGAGCAAGATCAGACTCCTTGAGGATCCTTGTGTTCACTGTCACCCGCAGGCT
CCCACTCACTTGACCTGTTTCACTCCCAGCTGCTGCCATTGCCACTCTGCCAACCCTGTT
CACCCCAGGCACTCACCAGCCCACCCAGCCAGGGGGCTCGGGAGAGCAAGGGGCTCCCTC
ATCTCCAAATTCTCCCCCACCGCAAAGCCAGAGAGAGCCAGACAGCGCCAGCTGCTCCAG
ATGTGCCTGCCCCCCCGCGCCCATGTTAGGGGAACAGGGCTGGGACTGGGGTCTGATCCC
CAGACTCTAGCTCTGCAGCCTCCTGGGGTGAGGGGGCTGTAGTCAGACCAAAGGAAGAAC
TCACAAATGTCTTGTTTATTTGTGTTTGTGACCAAGTGGCCCCACACCCAGGTTTATGGC
GTCATTTTCACTTGTATATTTTTCACATTGTAAATTTCTTGTACAAACCCAAAGAAAAAA
TTAAAAAAAATTTTTTTTGTTTTTAAAAAATGATGAGTGTGCTGGATAAAGATTATGGGA
ACTTGTTTGGCCCCCACACCCTCTTTATTTGCAGGCTGTTCTCCTACCCCTCAGAGGACT
TGAGGGAGAAAGGGCGATGGAAGAGGACAGATCCAGCGGAAAGTGTGAGATTCTCGTGGA
CCACAACATGAAACGGTCCCTCAGGGTTTGAGAAAATAGGAAAGCCTCCTATCTTGTCCC
TTGCACAGAACATTACTGGGGGCTGGGTGCAGGGACCCTTTGAGGGCCCTAGCTGAGAGT
CTGTGTCCCTCACTTTTGGGGGAGATCACGAGAAAGTGCACACCAATCCCAAGCTCCAGA
CCTTGGGATTCTCCACCCACTTCCTGTCTTGGAAGGTTGGGGGAATGCGAGTGACACAGG
CTGCCCAGTAGCACCTTGTCCTTGACACCAAGTTTATCTGGAATGGGTAGAGCTTTAGTG
ACAACTGGGGAGGGAGAAAGTGGGGGAATCTTGAACCACCACTGTGAAGCTTCGGGAGTA
GACAAGGCAAGCGGGAGTGGAAGGTTCCTGAATCTTGAGAATGGTAGGTGAGGTGGAGGG
ATGGCAGGATTCTCTGGAGTCAGTAGGAAGAGTTCT
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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40-169, - strand, RNAmicro p=0.999999 |
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658-753, + strand, RNAmicro p=0.999992 |
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50-146, + strand, RNAmicro p=0.999905 |
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531-639, - strand, RNAmicro p=0.999346 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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40-169, - strand, RNAmicro p=0.999999 |
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658-753, + strand, RNAmicro p=0.999992 |
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50-146, + strand, RNAmicro p=0.999905 |
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531-639, - strand, RNAmicro p=0.999346 |
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40-199, 484404 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI975854.1|),
blast E-value=0, identity=96.25% |
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40-199, 510165 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM106435.1|),
blast E-value=0, identity=96.25% |
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40-199, 1406852 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN548597.1|),
blast E-value=0, identity=96.25% |
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40-199, LB01720.CR_M06 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV816759.1|),
blast E-value=0, identity=96.25% |
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40-199, LB02020.CR_E13 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV824808.1|),
blast E-value=0, identity=96.25% |
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40-199, 000328BMPA005726HT BMPA Bos taurus cDNA, mRNA sequence (gb|DY083838.1|),
blast E-value=0, identity=96.25% |
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629-609, CH3#039_G02T3 Canine heart normalized cDNA Library in pBluescript
(gb|CF413560.1|), blast E-value=0.000000000005, identity=88.16% |
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629-609, CH3#039_G02T7 Canine heart normalized cDNA Library in pBluescript
(gb|CF413561.1|), blast E-value=0.000000000005, identity=88.16% |
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635-609, CT020003B20C05 Equine Articular Cartilage cDNA Library Equus
(gb|CX592986.1|), blast E-value=8e-39, identity=91.47% |
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629-609, GL-Cf-2312 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue
(gb|DN745520.1|), blast E-value=0.000000000005, identity=88.16% |
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642-778, POSM0605008_E04R porcine skeletal muscle cDNA library (PoSM) Sus
(gb|DV898232.1|), blast E-value=0, identity=100% |
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486-778, PADT0811001_L13F porcine adipose tissue cDNA library (PADT) Sus
(gb|EB411500.1|), blast E-value=0, identity=97.61% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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40-199, 484404 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI975854.1|),
blast E-value=0, identity=96.25% |
|
40-199, 510165 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM106435.1|),
blast E-value=0, identity=96.25% |
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40-199, 1406852 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN548597.1|),
blast E-value=0, identity=96.25% |
|
40-199, LB01720.CR_M06 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV816759.1|),
blast E-value=0, identity=96.25% |
|
40-199, LB02020.CR_E13 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV824808.1|),
blast E-value=0, identity=96.25% |
|
40-199, 000328BMPA005726HT BMPA Bos taurus cDNA, mRNA sequence (gb|DY083838.1|),
blast E-value=0, identity=96.25% |
|
629-609, CH3#039_G02T3 Canine heart normalized cDNA Library in pBluescript
(gb|CF413560.1|), blast E-value=0.000000000005, identity=88.16% |
|
629-609, CH3#039_G02T7 Canine heart normalized cDNA Library in pBluescript
(gb|CF413561.1|), blast E-value=0.000000000005, identity=88.16% |
|
635-609, CT020003B20C05 Equine Articular Cartilage cDNA Library Equus
(gb|CX592986.1|), blast E-value=8e-39, identity=91.47% |
|
629-609, GL-Cf-2312 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue
(gb|DN745520.1|), blast E-value=0.000000000005, identity=88.16% |
|
642-778, POSM0605008_E04R porcine skeletal muscle cDNA library (PoSM) Sus
(gb|DV898232.1|), blast E-value=0, identity=100% |
|
486-778, PADT0811001_L13F porcine adipose tissue cDNA library (PADT) Sus
(gb|EB411500.1|), blast E-value=0, identity=97.61% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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amn (0.417711) |
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nco (0.323468) |
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cag (0.302389) |
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pla (0.267344) |
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cli (0.152812) |
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hyp (0.142837) |
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nca (0.136874) |
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che (0.136314) |
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nmm (0.132802) |
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eru (0.120048) |
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ecc (0.115035) |
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amn (0.417711) |
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nco (0.323468) |
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cag (0.302389) |
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pla (0.267344) |
|
cli (0.152812) |
|
hyp (0.142837) |
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nca (0.136874) |
|
che (0.136314) |
|
nmm (0.132802) |
|
eru (0.120048) |
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ecc (0.115035) |