Non-Coding RNA Search

Ss1.1-OvaP-UMC-pputal2-002-e09.3

Sequence:


               
               AGATATTTAAGTAAAATTAGATTCAGATAAAAAAAGACATTCCTCTTTTACTGGTATGGA
GAAAAGTAATTAAGAATGGGTGAAGATGCAGATGAACTTGTGAGTGAAGAAAAAGATAAA
ACAAAACAAAACAAAACAAAAAAACCTGAAACTTTGTAGAAATAAATCCAACACTAGCTG
AAAAAAAAAAAAATAGAGGTACTAAAAATGATAAATCAGCTAATTGAAAAATAGCTACTC
CAAACTGGATACAAAATGAGACTAAATAACAGTAGCTTGTCCAGAATGTAGTTAAGGAGA
GAAAGAGATAAATTTTAAAAAAGA------------------------------------
------------------------------------------------------------
------------------------------------------------AGAGATTCTCAT
ACTATGTGAAGTAAGTCAGAAAAAAAAAAAAAAAAAGGGAACCCCACAATTCTGAGTGAG
TTCTGAACCAGCCCAACCTCAGGCTAGCTGTTGAGACATGCTACAATATTCATTTTCGTA
AAAATAAAGCTTAACTGTTCACAGATCTGGTTCCTCACTGGCTGGGGAGATCCCAGGGAG
AAGGAACAACAGATTTAAACTTGGGGATGGGCATGCTAGGGAAATGGTAAGACCAGCCTC
CATGGCTCAGTGTCCCAAAACACAAAGGTTTCTTTTCTTCAGGAGAACCTCTCACTCCCC
CTTTGGCCCTGCTGGTTTCCACTGCTCAGCAACCCTCATGCTGGCTTTATACCTACAAGG
TGTCTTAATAGCCTGGGCCGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATATTTAAGTAAAATTAGATTCAGATAAAAAAAGACATTCCTCTTTTACTGGTATGGA
GAAAAGTAATTAAGAATGGGTGAAGATGCAGATGAACTTGTGAGTGAAGAAAAAGATAAA
ACAAAACAAAACAAAACAAAAAAACCTGAAACTTTGTAGAAATAAATCCAACACTAGCTG
AAAAAAAAAAAAATAGAGGTACTAAAAATGATAAATCAGCTAATTGAAAAATAGCTACTC
CAAACTGGATACAAAATGAGACTAAATAACAGTAGCTTGTCCAGAATGTAGTTAAGGAGA
GAAAGAGATAAATTTTAAAAAAGA------------------------------------
------------------------------------------------------------
------------------------------------------------AGAGATTCTCAT
ACTATGTGAAGTAAGTCAGAAAAAAAAAAAAAAAAAGGGAACCCCACAATTCTGAGTGAG
TTCTGAACCAGCCCAACCTCAGGCTAGCTGTTGAGACATGCTACAATATTCATTTTCGTA
AAAATAAAGCTTAACTGTTCACAGATCTGGTTCCTCACTGGCTGGGGAGATCCCAGGGAG
AAGGAACAACAGATTTAAACTTGGGGATGGGCATGCTAGGGAAATGGTAAGACCAGCCTC
CATGGCTCAGTGTCCCAAAACACAAAGGTTTCTTTTCTTCAGGAGAACCTCTCACTCCCC
CTTTGGCCCTGCTGGTTTCCACTGCTCAGCAACCCTCATGCTGGCTTTATACCTACAAGG
TGTCTTAATAGCCTGGGCCGTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               480-639, - strand, RNAz p=0.769793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-639, - strand, RNAz p=0.769793

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               360-647, gnl|bosTau2|chr26 (13995472-13995192)
               

               
               360-647, gnl|Hg17|chr10 (103360532-103360237)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               360-647, gnl|bosTau2|chr26 (13995472-13995192)
               

               
               360-647, gnl|Hg17|chr10 (103360532-103360237)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	360-647, gnl\|bosTau2\|chr26 (13995472-13995192)
	360-647, gnl\|Hg17\|chr10 (103360532-103360237)