Non-Coding RNA Search

Ss1.1-Ovi1-UMC-pd3ov3-003-c01.3

Sequence:


               
               ATTACCAACTTTATTGTTTTGTTTTTCATTACTCAAGAAAAGTGAGAGGAAAATCTTCAC
ATTGAATTCTTCAGTTGCCTTTTTCTTACAGAATGACTGAAAATTTGAAAGAAAAGCCTA
TAAATGTGCACATATGCAACTATGTTCTCTGTGTTCCTAAAAAACCAAAATCAACTGAAA
TTTCAAGTCCTGCTGTGGAACATGTTTCTGTTTAATTCCCAAAGTGACACTTTCTCACAG
GTAGTATGTTAGCAAAATTTTGCAATTCAGTAGTCACACAGCTCCTGGATGAAGATAACA
GTGGGTAGACCAAAAAGTGACCTTGCTTATTAGTGTAGTGAAAACACACACCGCACATCA
CACAGAACTGAATCATATCACATGCTGCCTTTGGGACTTAAGTTACTGTTTGTTCCCTCA
ATTACAGTTTATCAGCTGGTGATGATATGATTTGCTTGGATTAGATCCTTTGTTTTTTTC
CCCTACCCACCTCCAGATAATGTGAGAAAATAGCCATGTCAGTATGTAGGAACTCTGATG
GTGCTCGGATTTGTGTGTTCAATCAAATGGGCTTAAATTGGCAAAAGAATCATTACGCCT
GTTCTGTTCTTAACAAGGGCTATACCACTGCATTTTTACATGTACCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACCAACTTTATTGTTTTGTTTTTCATTACTCAAGAAAAGTGAGAGGAAAATCTTCAC
ATTGAATTCTTCAGTTGCCTTTTTCTTACAGAATGACTGAAAATTTGAAAGAAAAGCCTA
TAAATGTGCACATATGCAACTATGTTCTCTGTGTTCCTAAAAAACCAAAATCAACTGAAA
TTTCAAGTCCTGCTGTGGAACATGTTTCTGTTTAATTCCCAAAGTGACACTTTCTCACAG
GTAGTATGTTAGCAAAATTTTGCAATTCAGTAGTCACACAGCTCCTGGATGAAGATAACA
GTGGGTAGACCAAAAAGTGACCTTGCTTATTAGTGTAGTGAAAACACACACCGCACATCA
CACAGAACTGAATCATATCACATGCTGCCTTTGGGACTTAAGTTACTGTTTGTTCCCTCA
ATTACAGTTTATCAGCTGGTGATGATATGATTTGCTTGGATTAGATCCTTTGTTTTTTTC
CCCTACCCACCTCCAGATAATGTGAGAAAATAGCCATGTCAGTATGTAGGAACTCTGATG
GTGCTCGGATTTGTGTGTTCAATCAAATGGGCTTAAATTGGCAAAAGAATCATTACGCCT
GTTCTGTTCTTAACAAGGGCTATACCACTGCATTTTTACATGTACCTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr7 (34515125-34514468)
               

               
               1-648, gnl|Hg17|chr5 (137303472-137302838)
               

               
               1-648, gnl|Mm7|chr18 (34817817-34817226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr7 (34515125-34514468)
               

               
               1-648, gnl|Hg17|chr5 (137303472-137302838)
               

               
               1-648, gnl|Mm7|chr18 (34817817-34817226)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               tbr (0.154178)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-648, gnl\|bosTau2\|chr7 (34515125-34514468)
	1-648, gnl\|Hg17\|chr5 (137303472-137302838)
	1-648, gnl\|Mm7\|chr18 (34817817-34817226)

	tbr (0.154178)
	ebs (0.118301)
	cbl (0.114797)
	cty (0.10408)
	jej (0.0989218)