Ss1.1-Ovi1-UMC-pd3ov3-013-a01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTGCTGCTGCTTCTGCTGCGGCGGCTGCCCCCGCGGCGCCGAGGCCGAGACTGAGGC CGGGGCGCGTGTTTGGCTAACGTGCCCAACCCGCGCGGCTTGGCTGCACCGGTCCTTGCG GCCGCCTGGGTGTCTCGGCTGGTCTCTGCGTTGCGCCGGTGAGGATGCGGCTGTTCCGGT GGCTGCTGAAGCAGCCGGTGCCCAAGCAGATCGAGCGCTACTCTCGCTTCTCGCCGTCAC CGCTGTCCATCAAGCAGTTCCTGGACTTCGGGAGAGATAATGCGTGTGAGAAAACTTCAT ATATGTTCCTGCGAAAGGAGCTTCCTGTGCGACTGGCTAACACAATGAGAGAAGTTAATC TTCTGCCAGATAATTTGCTTAACCGCCCTTCGGTGGGATTGGTTCAGAGTTGGTATATGC AGAGTTTTCTTGAACTTCTAGAATATGAAAACAAGAGCCCTGAAGATCCACAGGTCTTAG ATAACTTCCTACAAGTTCTGATTAAAGTCAGAAATAGACACAATGACGTGGTTCCTACAA TGGCACAAGGAGTGATCGAATACAAGGAGAAGTTTGGGTTTGATCCATTCATTAGCAGTA ACATCCAGTATTTTCTGGATCGGTTTTATACCAACCGCATCTCTTTCCGCATGCTTATTA ACCAGCACACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTGCTGCTGCTTCTGCTGCGGCGGCTGCCCCCGCGGCGCCGAGGCCGAGACTGAGGC CGGGGCGCGTGTTTGGCTAACGTGCCCAACCCGCGCGGCTTGGCTGCACCGGTCCTTGCG GCCGCCTGGGTGTCTCGGCTGGTCTCTGCGTTGCGCCGGTGAGGATGCGGCTGTTCCGGT GGCTGCTGAAGCAGCCGGTGCCCAAGCAGATCGAGCGCTACTCTCGCTTCTCGCCGTCAC CGCTGTCCATCAAGCAGTTCCTGGACTTCGGGAGAGATAATGCGTGTGAGAAAACTTCAT ATATGTTCCTGCGAAAGGAGCTTCCTGTGCGACTGGCTAACACAATGAGAGAAGTTAATC TTCTGCCAGATAATTTGCTTAACCGCCCTTCGGTGGGATTGGTTCAGAGTTGGTATATGC AGAGTTTTCTTGAACTTCTAGAATATGAAAACAAGAGCCCTGAAGATCCACAGGTCTTAG ATAACTTCCTACAAGTTCTGATTAAAGTCAGAAATAGACACAATGACGTGGTTCCTACAA TGGCACAAGGAGTGATCGAATACAAGGAGAAGTTTGGGTTTGATCCATTCATTAGCAGTA ACATCCAGTATTTTCTGGATCGGTTTTATACCAACCGCATCTCTTTCCGCATGCTTATTA ACCAGCACACAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 552-669, - strand, RNAz p=0.716747 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 552-669, - strand, RNAz p=0.716747 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 270-671, gnl|bosTau2|chr20 (2116855-2117256) | |
| 270-671, gnl|Hg17|chr14 (91245311-91246023) | |
| 508-669, gnl|bosTau2|chr19 (29265308-29265147) | |
| 508-669, gnl|canFam2|chr9 (29434251-29434453) | |
| 508-669, gnl|danRer3|chr9 (7903977-7903786) | |
| 508-669, gnl|dasNov1|scaffold_44507 (3399-3605) | |
| 508-669, gnl|echTel1|scaffold_309297 (1588-1384) | |
| 508-669, gnl|fr1|chrUn (35471909-35472115) | |
| 508-669, gnl|galGal2|chr1 (111463332-111463134) | |
| 508-669, gnl|hg17|chr17 (45538236-45538451) | |
| 508-669, gnl|Hg17|chr17 (45538271-45538432) | |
| 508-669, gnl|loxAfr1|scaffold_10870 (24118-24310) | |
| 508-669, gnl|mm7|chr11 (95141072-95140854) | |
| 508-669, gnl|Mm7|chr11 (95141036-95140875) | |
| 508-669, gnl|monDom2|scaffold_18 (43300145-43299928) | |
| 508-669, gnl|oryCun1|scaffold_98507 (1459-1277) | |
| 508-669, gnl|panTro1|chr19_random (31155158-31155373) | |
| 508-669, gnl|rheMac2|chr16 (34342476-34342691) | |
| 508-669, gnl|rn3|chr10 (83730225-83730011) | |
| 508-669, gnl|tetNig1|chr2 (11383590-11383376) | |
| 508-669, gnl|xenTro1|scaffold_640 (200890-201087) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 270-671, gnl|bosTau2|chr20 (2116855-2117256) | |
| 270-671, gnl|Hg17|chr14 (91245311-91246023) | |
| 508-669, gnl|bosTau2|chr19 (29265308-29265147) | |
| 508-669, gnl|canFam2|chr9 (29434251-29434453) | |
| 508-669, gnl|danRer3|chr9 (7903977-7903786) | |
| 508-669, gnl|dasNov1|scaffold_44507 (3399-3605) | |
| 508-669, gnl|echTel1|scaffold_309297 (1588-1384) | |
| 508-669, gnl|fr1|chrUn (35471909-35472115) | |
| 508-669, gnl|galGal2|chr1 (111463332-111463134) | |
| 508-669, gnl|hg17|chr17 (45538236-45538451) | |
| 508-669, gnl|Hg17|chr17 (45538271-45538432) | |
| 508-669, gnl|loxAfr1|scaffold_10870 (24118-24310) | |
| 508-669, gnl|mm7|chr11 (95141072-95140854) | |
| 508-669, gnl|Mm7|chr11 (95141036-95140875) | |
| 508-669, gnl|monDom2|scaffold_18 (43300145-43299928) | |
| 508-669, gnl|oryCun1|scaffold_98507 (1459-1277) | |
| 508-669, gnl|panTro1|chr19_random (31155158-31155373) | |
| 508-669, gnl|rheMac2|chr16 (34342476-34342691) | |
| 508-669, gnl|rn3|chr10 (83730225-83730011) | |
| 508-669, gnl|tetNig1|chr2 (11383590-11383376) | |
| 508-669, gnl|xenTro1|scaffold_640 (200890-201087) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |