Non-Coding RNA Search

Ss1.1-Ovi2-UMC-peov1-011-e06.3

Sequence:


               
               AAAGCTGGAATCAGGATCCATTTTTAAAGGCCAGCAGCTTGTGATGATGCCAAACAAGCA
CAATGTGGAAGTTCTTGGAATACTCTCTGATGATGCTGAAACTGATTATGTAGCCCCAGG
TGAAAATCTTAAAATCAGACTGAAGGGAATTGAAGAAGAAGAGATTCTTCCAGGATTCAT
ACTCTGTGATCCTAATAATCTTTGCCATTCTGGGCGCACATTCGATGTTCAGATAGTGAT
TATTGAGCACAAGTCCATCATCTGTCCAGGTTATAATGCGGTGCTGCACATTCATACTTG
TATTGAGGAAGTTGAGATAACAGCCTTAATCTCCTTGGTAGACAAAAAATCAGGAGAAAA
GAGTAAGACGCGGCCCCGCTTCGTGAAACAAGATCAAGTGTGCATTGCCCGTTTAAGGAC
AGCAGGAACTATCTGCCTTGAGACCTTCAAAGATTTTCCTCAGATGGGTCGTTTCACTTT
AAGAGATGAGGGTAAGACCATTGCGATTGGAAAAGTTCTGAAACTGGTCCCAGAGAAGGA
CTAAGCAGTTTTCTTGATGCCCCTGCACAATACTGTGAACATTGACTATGAAAGTTCCAC
CACCTTCTCTTATTTACTGCCCATTGACAGACTTTTCTCCATATTTTGCAAAGAAAAATT
TCACAGCAAAAATCCATGTTTTGTCAGCTTTCTCATGTTGAGATCTAAGTTATGTCACTG
TTGAATTTACCCACAGGTTTCCTCCACCTATGACATTCTGCTTCCTTGGACAGACTCAGT
AATAGCTTTGTAAGTGATGTGGATGTAATTGTCTATAACAATGAAAAATTAATATATTTT
TTAATTTTTCATTTTCCCTTAGGAGATCTAGACAACCCATCTTCCACGCAGACCAATCAG
AGTTTGTTCAGTGTGTGTGTACATGTTAAAAAGACAACTAACATGTGAATAAAATACTCC
ATTTGAAACTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCTGGAATCAGGATCCATTTTTAAAGGCCAGCAGCTTGTGATGATGCCAAACAAGCA
CAATGTGGAAGTTCTTGGAATACTCTCTGATGATGCTGAAACTGATTATGTAGCCCCAGG
TGAAAATCTTAAAATCAGACTGAAGGGAATTGAAGAAGAAGAGATTCTTCCAGGATTCAT
ACTCTGTGATCCTAATAATCTTTGCCATTCTGGGCGCACATTCGATGTTCAGATAGTGAT
TATTGAGCACAAGTCCATCATCTGTCCAGGTTATAATGCGGTGCTGCACATTCATACTTG
TATTGAGGAAGTTGAGATAACAGCCTTAATCTCCTTGGTAGACAAAAAATCAGGAGAAAA
GAGTAAGACGCGGCCCCGCTTCGTGAAACAAGATCAAGTGTGCATTGCCCGTTTAAGGAC
AGCAGGAACTATCTGCCTTGAGACCTTCAAAGATTTTCCTCAGATGGGTCGTTTCACTTT
AAGAGATGAGGGTAAGACCATTGCGATTGGAAAAGTTCTGAAACTGGTCCCAGAGAAGGA
CTAAGCAGTTTTCTTGATGCCCCTGCACAATACTGTGAACATTGACTATGAAAGTTCCAC
CACCTTCTCTTATTTACTGCCCATTGACAGACTTTTCTCCATATTTTGCAAAGAAAAATT
TCACAGCAAAAATCCATGTTTTGTCAGCTTTCTCATGTTGAGATCTAAGTTATGTCACTG
TTGAATTTACCCACAGGTTTCCTCCACCTATGACATTCTGCTTCCTTGGACAGACTCAGT
AATAGCTTTGTAAGTGATGTGGATGTAATTGTCTATAACAATGAAAAATTAATATATTTT
TTAATTTTTCATTTTCCCTTAGGAGATCTAGACAACCCATCTTCCACGCAGACCAATCAG
AGTTTGTTCAGTGTGTGTGTACATGTTAAAAAGACAACTAACATGTGAATAAAATACTCC
ATTTGAAACTCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61880361|ref|XP_610849.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61880361|ref|XP_610849.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               682-793, + strand, RNAz p=0.763697

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               682-793, + strand, RNAz p=0.763697

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_002094, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002094, +

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               56-235, gnl|bosTau2|chr25 (9902897-9902718)
               

               
               56-235, gnl|canFam2|chr6 (34002829-34002644)
               

               
               56-235, gnl|danRer3|chr3 (32345955-32345770)
               

               
               56-235, gnl|dasNov1|scaffold_6163 (30659-30845)
               

               
               56-235, gnl|echTel1|scaffold_287774 (33153-33338)
               

               
               56-235, gnl|fr1|chrUn (112218772-112218587)
               

               
               56-235, gnl|galGal2|chr14 (2323744-2323929)
               

               
               56-235, gnl|hg17|chr16 (11878754-11878939)
               

               
               56-235, gnl|Hg17|chr16 (11878941-11878762)
               

               
               56-235, gnl|loxAfr1|scaffold_113017 (1841-1668)
               

               
               56-235, gnl|mm7|chr16 (10903616-10903796)
               

               
               56-235, gnl|Mm7|chr16 (10903798-10903619)
               

               
               56-235, gnl|monDom2|scaffold_17 (28217612-28217785)
               

               
               56-235, gnl|oryCun1|scaffold_153053 (10093-10278)
               

               
               56-235, gnl|panTro1|chr18 (32334681-32334866)
               

               
               56-235, gnl|rheMac2|chr20 (11948514-11948699)
               

               
               56-235, gnl|rn3|chr10 (4279542-4279357)
               

               
               56-235, gnl|tetNig1|chrUn_random (36671175-36671350)
               

               
               56-235, gnl|xenTro1|scaffold_290 (343650-343823)
               


               
               491-969, gnl|bosTau2|chr25 (9899809-9899320)
               

               
               491-969, gnl|Hg17|chr16 (11874530-11874036)
               

               
               491-969, gnl|Mm7|chr16 (10900082-10899601)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-235, gnl|bosTau2|chr25 (9902897-9902718)
               

               
               56-235, gnl|canFam2|chr6 (34002829-34002644)
               

               
               56-235, gnl|danRer3|chr3 (32345955-32345770)
               

               
               56-235, gnl|dasNov1|scaffold_6163 (30659-30845)
               

               
               56-235, gnl|echTel1|scaffold_287774 (33153-33338)
               

               
               56-235, gnl|fr1|chrUn (112218772-112218587)
               

               
               56-235, gnl|galGal2|chr14 (2323744-2323929)
               

               
               56-235, gnl|hg17|chr16 (11878754-11878939)
               

               
               56-235, gnl|Hg17|chr16 (11878941-11878762)
               

               
               56-235, gnl|loxAfr1|scaffold_113017 (1841-1668)
               

               
               56-235, gnl|mm7|chr16 (10903616-10903796)
               

               
               56-235, gnl|Mm7|chr16 (10903798-10903619)
               

               
               56-235, gnl|monDom2|scaffold_17 (28217612-28217785)
               

               
               56-235, gnl|oryCun1|scaffold_153053 (10093-10278)
               

               
               56-235, gnl|panTro1|chr18 (32334681-32334866)
               

               
               56-235, gnl|rheMac2|chr20 (11948514-11948699)
               

               
               56-235, gnl|rn3|chr10 (4279542-4279357)
               

               
               56-235, gnl|tetNig1|chrUn_random (36671175-36671350)
               

               
               56-235, gnl|xenTro1|scaffold_290 (343650-343823)
               


               
               491-969, gnl|bosTau2|chr25 (9899809-9899320)
               

               
               491-969, gnl|Hg17|chr16 (11874530-11874036)
               

               
               491-969, gnl|Mm7|chr16 (10900082-10899601)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

	56-235, gnl\|bosTau2\|chr25 (9902897-9902718)
	56-235, gnl\|canFam2\|chr6 (34002829-34002644)
	56-235, gnl\|danRer3\|chr3 (32345955-32345770)
	56-235, gnl\|dasNov1\|scaffold_6163 (30659-30845)
	56-235, gnl\|echTel1\|scaffold_287774 (33153-33338)
	56-235, gnl\|fr1\|chrUn (112218772-112218587)
	56-235, gnl\|galGal2\|chr14 (2323744-2323929)
	56-235, gnl\|hg17\|chr16 (11878754-11878939)
	56-235, gnl\|Hg17\|chr16 (11878941-11878762)
	56-235, gnl\|loxAfr1\|scaffold_113017 (1841-1668)
	56-235, gnl\|mm7\|chr16 (10903616-10903796)
	56-235, gnl\|Mm7\|chr16 (10903798-10903619)
	56-235, gnl\|monDom2\|scaffold_17 (28217612-28217785)
	56-235, gnl\|oryCun1\|scaffold_153053 (10093-10278)
	56-235, gnl\|panTro1\|chr18 (32334681-32334866)
	56-235, gnl\|rheMac2\|chr20 (11948514-11948699)
	56-235, gnl\|rn3\|chr10 (4279542-4279357)
	56-235, gnl\|tetNig1\|chrUn_random (36671175-36671350)
	56-235, gnl\|xenTro1\|scaffold_290 (343650-343823)

	491-969, gnl\|bosTau2\|chr25 (9899809-9899320)
	491-969, gnl\|Hg17\|chr16 (11874530-11874036)
	491-969, gnl\|Mm7\|chr16 (10900082-10899601)