Ss1.1-Ovi2-UMC-peov1-011-e11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCAGAGATTGCTTTTCCTTCCAGTCTGCTCTCCAGGGCAGCCAGCATCCTGCCTGCCC CTGGAGTGTTTTAACAAGTGGAGCCCAGCCTCATCTTCCTAAGGGGTGCAGCCAGCACTC TAAAACCAACGCTGTAACAGCCTCGACCCGTAGGCCGGGTGGGACCTGTTTCTCCCTAAT GAAAATTCAGAGAAGTTAGGGAAGTCCCAGGGTCCCAGCCAAGGGTCCCCGTCTGGTCTG GGTAGCCCTAAAACCTGTCCCGCCTCACCACCCTGCCTCTCCCCGCCCCCAGCCCTGCTT TTTTTTTTTTTTTTAACCTTAAGCTTTAAGTTGAAACATTCTCAGATGTTTGGGGGGGAA ACATCATCTTACAATGGGTCCTTGTGCTTGCCTTCTGGGGAGGCGGTCCTGAGCAGGTGA ATCATATGGCATTTATGCATATGTAATATGCGGACTGCACCCACCTCTTCCCCCCTCGAC CTTTGCCTCTTGGGTTGTTGCGCTACTTTCCCCTTACTTTGCTACATTTCTATAGTTAAG TTGGTTTTACTTGAATGATTCATGTTTAGGGAAGAAAATGAAAAAATGCCCTTAAAATTT GTTTCAACTCCTCCTGCAAATAAAAAAATAAATGAAGTGGCAGATGTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCAGAGATTGCTTTTCCTTCCAGTCTGCTCTCCAGGGCAGCCAGCATCCTGCCTGCCC CTGGAGTGTTTTAACAAGTGGAGCCCAGCCTCATCTTCCTAAGGGGTGCAGCCAGCACTC TAAAACCAACGCTGTAACAGCCTCGACCCGTAGGCCGGGTGGGACCTGTTTCTCCCTAAT GAAAATTCAGAGAAGTTAGGGAAGTCCCAGGGTCCCAGCCAAGGGTCCCCGTCTGGTCTG GGTAGCCCTAAAACCTGTCCCGCCTCACCACCCTGCCTCTCCCCGCCCCCAGCCCTGCTT TTTTTTTTTTTTTTAACCTTAAGCTTTAAGTTGAAACATTCTCAGATGTTTGGGGGGGAA ACATCATCTTACAATGGGTCCTTGTGCTTGCCTTCTGGGGAGGCGGTCCTGAGCAGGTGA ATCATATGGCATTTATGCATATGTAATATGCGGACTGCACCCACCTCTTCCCCCCTCGAC CTTTGCCTCTTGGGTTGTTGCGCTACTTTCCCCTTACTTTGCTACATTTCTATAGTTAAG TTGGTTTTACTTGAATGATTCATGTTTAGGGAAGAAAATGAAAAAATGCCCTTAAAATTT GTTTCAACTCCTCCTGCAAATAAAAAAATAAATGAAGTGGCAGATGTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 338-576, - strand, RNAz p=0.609833 | |
| 367-463, - strand, RNAz p=0.568623 | |
| 395-486, - strand, RNAz p=0.731712 | |
| 518-626, + strand, RNAz p=0.604289 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 338-576, - strand, RNAz p=0.609833 | |
| 367-463, - strand, RNAz p=0.568623 | |
| 395-486, - strand, RNAz p=0.731712 | |
| 518-626, + strand, RNAz p=0.604289 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 22-301, gnl|bosTau2|chr5 (45517426-45517698) | |
| 22-301, gnl|canFam2|chr10 (30994281-30994098) | |
| 22-301, gnl|hg17|chr22 (35209956-35210130) | |
| 22-301, gnl|Hg17|chr22 (35210244-35209908) | |
| 22-301, gnl|loxAfr1|scaffold_46916 (12191-12389) | |
| 22-301, gnl|mm7|chr15 (78025559-78025705) | |
| 22-301, gnl|Mm7|chr15 (78025806-78025526) | |
| 22-301, gnl|oryCun1|scaffold_95961 (565-434) | |
| 22-301, gnl|panTro1|chr23 (35372395-35372569) | |
| 22-301, gnl|rn3|chr7 (115895422-115895550) | |
| 302-650, gnl|bosTau2|chr3 (76619968-76619621) | |
| 302-650, gnl|canFam2|chr15 (8964644-8964262) | |
| 302-650, gnl|canFam2|chr15 (8964879-8964247) | |
| 302-650, gnl|canFam2|chr15 (8964771-8964249) | |
| 302-650, gnl|dasNov1|scaffold_26532 (17338-16731) | |
| 302-650, gnl|dasNov1|scaffold_26532 (17241-16751) | |
| 302-650, gnl|dasNov1|scaffold_93157 (3489-3830) | |
| 302-650, gnl|echTel1|scaffold_204977 (10858-10567) | |
| 302-650, gnl|echTel1|scaffold_204977 (11058-10553) | |
| 302-650, gnl|echTel1|scaffold_204977 (10970-10553) | |
| 302-650, gnl|Hg17|chr1 (36439710-36440051) | |
| 302-650, gnl|hg17|chr17 (15927605-15927959) | |
| 302-650, gnl|hg17|chr3 (150901928-150902548) | |
| 302-650, gnl|hg17|chr3 (31473227-31473742) | |
| 302-650, gnl|loxAfr1|scaffold_61203 (399-755) | |
| 302-650, gnl|loxAfr1|scaffold_61203 (176-769) | |
| 302-650, gnl|loxAfr1|scaffold_61203 (284-767) | |
| 302-650, gnl|mm7|chr4 (125609335-125608731) | |
| 302-650, gnl|mm7|chr4 (125609229-125608733) | |
| 302-650, gnl|Mm7|chr4 (125609067-125608729) | |
| 302-650, gnl|mm7|chr7 (59295320-59295660) | |
| 302-650, gnl|monDom2|scaffold_43 (13871293-13870937) | |
| 302-650, gnl|monDom2|scaffold_43 (13871500-13870924) | |
| 302-650, gnl|monDom2|scaffold_43 (13871409-13870939) | |
| 302-650, gnl|oryCun1|scaffold_198624 (54239-54588) | |
| 302-650, gnl|oryCun1|scaffold_198624 (53978-54602) | |
| 302-650, gnl|oryCun1|scaffold_198624 (54083-54600) | |
| 302-650, gnl|panTro1|chr19_random (4805348-4805705) | |
| 302-650, gnl|panTro1|chr2 (153928247-153928864) | |
| 302-650, gnl|panTro1|chr2 (32452688-32453207) | |
| 302-650, gnl|rheMac2|chr16 (16379882-16379519) | |
| 302-650, gnl|rheMac2|chr2 (138080720-138080097) | |
| 302-650, gnl|rheMac2|chr2 (173935278-173935789) | |
| 302-650, gnl|rn3|chr5 (145531903-145531559) | |
| 302-650, gnl|rn3|chr5 (145532148-145531545) | |
| 302-650, gnl|rn3|chr5 (145532041-145531547) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-301, gnl|bosTau2|chr5 (45517426-45517698) | |
| 22-301, gnl|canFam2|chr10 (30994281-30994098) | |
| 22-301, gnl|hg17|chr22 (35209956-35210130) | |
| 22-301, gnl|Hg17|chr22 (35210244-35209908) | |
| 22-301, gnl|loxAfr1|scaffold_46916 (12191-12389) | |
| 22-301, gnl|mm7|chr15 (78025559-78025705) | |
| 22-301, gnl|Mm7|chr15 (78025806-78025526) | |
| 22-301, gnl|oryCun1|scaffold_95961 (565-434) | |
| 22-301, gnl|panTro1|chr23 (35372395-35372569) | |
| 22-301, gnl|rn3|chr7 (115895422-115895550) | |
| 302-650, gnl|bosTau2|chr3 (76619968-76619621) | |
| 302-650, gnl|canFam2|chr15 (8964644-8964262) | |
| 302-650, gnl|canFam2|chr15 (8964879-8964247) | |
| 302-650, gnl|canFam2|chr15 (8964771-8964249) | |
| 302-650, gnl|dasNov1|scaffold_26532 (17338-16731) | |
| 302-650, gnl|dasNov1|scaffold_26532 (17241-16751) | |
| 302-650, gnl|dasNov1|scaffold_93157 (3489-3830) | |
| 302-650, gnl|echTel1|scaffold_204977 (10858-10567) | |
| 302-650, gnl|echTel1|scaffold_204977 (11058-10553) | |
| 302-650, gnl|echTel1|scaffold_204977 (10970-10553) | |
| 302-650, gnl|Hg17|chr1 (36439710-36440051) | |
| 302-650, gnl|hg17|chr17 (15927605-15927959) | |
| 302-650, gnl|hg17|chr3 (150901928-150902548) | |
| 302-650, gnl|hg17|chr3 (31473227-31473742) | |
| 302-650, gnl|loxAfr1|scaffold_61203 (399-755) | |
| 302-650, gnl|loxAfr1|scaffold_61203 (176-769) | |
| 302-650, gnl|loxAfr1|scaffold_61203 (284-767) | |
| 302-650, gnl|mm7|chr4 (125609335-125608731) | |
| 302-650, gnl|mm7|chr4 (125609229-125608733) | |
| 302-650, gnl|Mm7|chr4 (125609067-125608729) | |
| 302-650, gnl|mm7|chr7 (59295320-59295660) | |
| 302-650, gnl|monDom2|scaffold_43 (13871293-13870937) | |
| 302-650, gnl|monDom2|scaffold_43 (13871500-13870924) | |
| 302-650, gnl|monDom2|scaffold_43 (13871409-13870939) | |
| 302-650, gnl|oryCun1|scaffold_198624 (54239-54588) | |
| 302-650, gnl|oryCun1|scaffold_198624 (53978-54602) | |
| 302-650, gnl|oryCun1|scaffold_198624 (54083-54600) | |
| 302-650, gnl|panTro1|chr19_random (4805348-4805705) | |
| 302-650, gnl|panTro1|chr2 (153928247-153928864) | |
| 302-650, gnl|panTro1|chr2 (32452688-32453207) | |
| 302-650, gnl|rheMac2|chr16 (16379882-16379519) | |
| 302-650, gnl|rheMac2|chr2 (138080720-138080097) | |
| 302-650, gnl|rheMac2|chr2 (173935278-173935789) | |
| 302-650, gnl|rn3|chr5 (145531903-145531559) | |
| 302-650, gnl|rn3|chr5 (145532148-145531545) | |
| 302-650, gnl|rn3|chr5 (145532041-145531547) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| mas (0.210305) | |
| fty (0.17584) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ute (0.132784) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| mas (0.210305) | |
| fty (0.17584) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ute (0.132784) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| eje (0.0988338) |