Non-Coding RNA Search

Ss1.1-Ovi2-UMC-peov3-004-f08.3

Sequence:


               
               GCTATGTGAAGTTTTAACTATCAAAGAGTTTTTCTTTTGCACTTTCCTTTGGTGTTTCTT
AAAGCCAAACTTAAGCAGGAGGAAATTAATGTTCTTAAGTGGACAGTGGGTGGGTTTTTC
TGTGGGCTTTTGTTTGTTTTTCTGTGGGCCCTCTAATGGAATTGATCTCTTTGGCTGTTC
AATTTTTTTCATATTGTATTTTTTAAATTTGTTGTACGGTGCCCTGTGAGCATCAAGTAC
CACCAGATGAATAAAACTTATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTATGTGAAGTTTTAACTATCAAAGAGTTTTTCTTTTGCACTTTCCTTTGGTGTTTCTT
AAAGCCAAACTTAAGCAGGAGGAAATTAATGTTCTTAAGTGGACAGTGGGTGGGTTTTTC
TGTGGGCTTTTGTTTGTTTTTCTGTGGGCCCTCTAATGGAATTGATCTCTTTGGCTGTTC
AATTTTTTTCATATTGTATTTTTTAAATTTGTTGTACGGTGCCCTGTGAGCATCAAGTAC
CACCAGATGAATAAAACTTATATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-261, - strand, RNAz p=0.829331

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-261, - strand, RNAz p=0.829331

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-261, gnl|bosTau2|chr2 (50619670-50619414)
               

               
               1-261, gnl|canFam2|chr37 (9921971-9922611)
               

               
               1-261, gnl|dasNov1|scaffold_32455 (4800-4133)
               

               
               1-261, gnl|hg17|chr2 (198079894-198080545)
               

               
               1-261, gnl|Hg17|chr2 (198080279-198080024)
               

               
               1-261, gnl|loxAfr1|scaffold_26479 (11032-10372)
               

               
               1-261, gnl|mm7|chr1 (55232358-55233029)
               

               
               1-261, gnl|Mm7|chr1 (55232765-55232490)
               

               
               1-261, gnl|monDom2|scaffold_2 (107057110-107057793)
               

               
               1-261, gnl|oryCun1|scaffold_193724 (9214-9863)
               

               
               1-261, gnl|panTro1|chr13 (88032259-88032914)
               

               
               1-261, gnl|rheMac2|chr12 (61000791-61001443)
               

               
               1-261, gnl|rn3|chr9 (53796221-53796914)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-261, gnl|bosTau2|chr2 (50619670-50619414)
               

               
               1-261, gnl|canFam2|chr37 (9921971-9922611)
               

               
               1-261, gnl|dasNov1|scaffold_32455 (4800-4133)
               

               
               1-261, gnl|hg17|chr2 (198079894-198080545)
               

               
               1-261, gnl|Hg17|chr2 (198080279-198080024)
               

               
               1-261, gnl|loxAfr1|scaffold_26479 (11032-10372)
               

               
               1-261, gnl|mm7|chr1 (55232358-55233029)
               

               
               1-261, gnl|Mm7|chr1 (55232765-55232490)
               

               
               1-261, gnl|monDom2|scaffold_2 (107057110-107057793)
               

               
               1-261, gnl|oryCun1|scaffold_193724 (9214-9863)
               

               
               1-261, gnl|panTro1|chr13 (88032259-88032914)
               

               
               1-261, gnl|rheMac2|chr12 (61000791-61001443)
               

               
               1-261, gnl|rn3|chr9 (53796221-53796914)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               hea (0.204499)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               hea (0.204499)

	1-261, gnl\|bosTau2\|chr2 (50619670-50619414)
	1-261, gnl\|canFam2\|chr37 (9921971-9922611)
	1-261, gnl\|dasNov1\|scaffold_32455 (4800-4133)
	1-261, gnl\|hg17\|chr2 (198079894-198080545)
	1-261, gnl\|Hg17\|chr2 (198080279-198080024)
	1-261, gnl\|loxAfr1\|scaffold_26479 (11032-10372)
	1-261, gnl\|mm7\|chr1 (55232358-55233029)
	1-261, gnl\|Mm7\|chr1 (55232765-55232490)
	1-261, gnl\|monDom2\|scaffold_2 (107057110-107057793)
	1-261, gnl\|oryCun1\|scaffold_193724 (9214-9863)
	1-261, gnl\|panTro1\|chr13 (88032259-88032914)
	1-261, gnl\|rheMac2\|chr12 (61000791-61001443)
	1-261, gnl\|rn3\|chr9 (53796221-53796914)