Non-Coding RNA Search

Ss1.1-Pey1-02G05.3

Sequence:


               
               GTTTTAAATAAACATTTAAACTCTCAGTCAGTTGTATGCCTCAGTGAGCCTATGCATGGA
CCTTAGTCACTGGGGAGAAAACACGCAGACTCTAGGCCTTCAGGAATCTTCGATTCAGTG
AGTCTTTATATAAATAAATAGGTGGTCTTATAACAGAAACAGTGCAAGGGATATTTGCCT
AGAAATAATCTTTGCTTCTTTCCACCTTTTCTTGCTAACAATCATTTTTGCTGCTACAAC
TTTATTTCCCCCCAAACGTCTAAAATATTTTGCTTAAACTGCAGAGGGAGAAGAAAATGA
GCCATTAAAAGAGGAAGAGTCGTGTCTCGTACTCGTCTCCTCAGTCACAGTGGGTTTTTT
CAAGTGATAATGCCAGTTTATGTTTGTAAAACTGTTTTCCCTTGAAAAGGTTGAACTGTA
TTTGGTCTCCCTGGCATAGCACAGCCAAGTTACAACTTGGCAGAACATTTCACTATAGTT
TAAAGCAAGAACAGCCTTAAACTCACATTTCATTTGGTTTTGCCATATTTTTGGAAACAT
TCATAGTAGAACAACTCTGGAGCAAGAATGTATTGTAAATAAATGCTTTTAAATGAGCGT
CCCTGGGCCTCCAAAGAAGTATTATTCATGATAGTGTCAGGGCAGAGTGGGCTTGTAGTC
AGGACTACAAAACATGTCCCTTCGTACCAGAAAGCCAAGCATCATTTATTGCTTCAATGA
TTAACTATGGAAATAAACATGCTGATGACTAAACCTCCCAGATCATGAATGTTAGGGAGA
AAAACACTATATCACATCTCTGCTTCCTCCTGTGTAGTTGTGAAAAGTGATAAATTGATG
ACCTACAGCAAATGTTGGCCAACGGTGCTCTGCTGCATTCAATACACTGCTCTTAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTAAATAAACATTTAAACTCTCAGTCAGTTGTATGCCTCAGTGAGCCTATGCATGGA
CCTTAGTCACTGGGGAGAAAACACGCAGACTCTAGGCCTTCAGGAATCTTCGATTCAGTG
AGTCTTTATATAAATAAATAGGTGGTCTTATAACAGAAACAGTGCAAGGGATATTTGCCT
AGAAATAATCTTTGCTTCTTTCCACCTTTTCTTGCTAACAATCATTTTTGCTGCTACAAC
TTTATTTCCCCCCAAACGTCTAAAATATTTTGCTTAAACTGCAGAGGGAGAAGAAAATGA
GCCATTAAAAGAGGAAGAGTCGTGTCTCGTACTCGTCTCCTCAGTCACAGTGGGTTTTTT
CAAGTGATAATGCCAGTTTATGTTTGTAAAACTGTTTTCCCTTGAAAAGGTTGAACTGTA
TTTGGTCTCCCTGGCATAGCACAGCCAAGTTACAACTTGGCAGAACATTTCACTATAGTT
TAAAGCAAGAACAGCCTTAAACTCACATTTCATTTGGTTTTGCCATATTTTTGGAAACAT
TCATAGTAGAACAACTCTGGAGCAAGAATGTATTGTAAATAAATGCTTTTAAATGAGCGT
CCCTGGGCCTCCAAAGAAGTATTATTCATGATAGTGTCAGGGCAGAGTGGGCTTGTAGTC
AGGACTACAAAACATGTCCCTTCGTACCAGAAAGCCAAGCATCATTTATTGCTTCAATGA
TTAACTATGGAAATAAACATGCTGATGACTAAACCTCCCAGATCATGAATGTTAGGGAGA
AAAACACTATATCACATCTCTGCTTCCTCCTGTGTAGTTGTGAAAAGTGATAAATTGATG
ACCTACAGCAAATGTTGGCCAACGGTGCTCTGCTGCATTCAATACACTGCTCTTAAGAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-896, gnl|bosTau2|chr10 (56692350-56691452)
               

               
               1-896, gnl|Hg17|chr14 (74618603-74617710)
               

               
               1-896, gnl|Mm7|chr12 (83299377-83298379)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-896, gnl|bosTau2|chr10 (56692350-56691452)
               

               
               1-896, gnl|Hg17|chr14 (74618603-74617710)
               

               
               1-896, gnl|Mm7|chr12 (83299377-83298379)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               lnt (0.284616)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

	1-896, gnl\|bosTau2\|chr10 (56692350-56691452)
	1-896, gnl\|Hg17\|chr14 (74618603-74617710)
	1-896, gnl\|Mm7\|chr12 (83299377-83298379)

	lnt (0.284616)
	sag (0.182715)
	gul (0.177588)
	ton (0.1755)
	spl (0.143184)
	ute (0.132784)
	thg (0.126791)
	eep (0.122564)