Non-Coding RNA Search

Ss1.1-Pey1-03A10.5

Sequence:


               
               GTGACTGCGGTGTGCGTGCTGGACGTTAATACACGTACTCATGGCGAACACTAAAAACTC
AGTGGATTCAAAATCCATTAAAACTTTGGAGACAAAGATCTTACATGGAAGCAAATCAGT
GGACTCTGGAATATCCTTGGATGTCAGTTACAAAATGGATTATCCTGAAATGGGTTTATG
TATAATAATTAATAATAAGAACTTTGATAAAAATACCGGAATGGCATGTCGATCTGGTAC
AGATGTGGATGCTGCAAATCTCAGGGAGACCTTCACAAACTTGAAATATGAAGTCAGGAA
TAAAAATGATCTTACACGTGAAGAAATTTTGGAGTTAATGCACAGTGTTTCTAAAGAAGA
CCATAGTAAAAGGAGCAGTTTTATTTGCGTGCTTCTAAGCCATGGTGAAGAAGGAAAAAT
TTTTGGAACAAATGGACCTGTTGATCTGAAAAAATTAACAAGTTTCTTCAGAGGGGACTG
TTGTAGAACTCTAACTGGCAAACCCAAACTTTTCATAATTCAGGCCTGCCGAGGCACAGA
ATTGGACTGTGGGATTGAGACGGACAGTGGGACTGAAGATGACATGGCGTGTCAGAAAAT
ACCAGTTGAGGCAGACTTCTTGTATGCATATTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACTGCGGTGTGCGTGCTGGACGTTAATACACGTACTCATGGCGAACACTAAAAACTC
AGTGGATTCAAAATCCATTAAAACTTTGGAGACAAAGATCTTACATGGAAGCAAATCAGT
GGACTCTGGAATATCCTTGGATGTCAGTTACAAAATGGATTATCCTGAAATGGGTTTATG
TATAATAATTAATAATAAGAACTTTGATAAAAATACCGGAATGGCATGTCGATCTGGTAC
AGATGTGGATGCTGCAAATCTCAGGGAGACCTTCACAAACTTGAAATATGAAGTCAGGAA
TAAAAATGATCTTACACGTGAAGAAATTTTGGAGTTAATGCACAGTGTTTCTAAAGAAGA
CCATAGTAAAAGGAGCAGTTTTATTTGCGTGCTTCTAAGCCATGGTGAAGAAGGAAAAAT
TTTTGGAACAAATGGACCTGTTGATCTGAAAAAATTAACAAGTTTCTTCAGAGGGGACTG
TTGTAGAACTCTAACTGGCAAACCCAAACTTTTCATAATTCAGGCCTGCCGAGGCACAGA
ATTGGACTGTGGGATTGAGACGGACAGTGGGACTGAAGATGACATGGCGTGTCAGAAAAT
ACCAGTTGAGGCAGACTTCTTGTATGCATATTCTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3293438|gb|AAC25713.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3293438|gb|AAC25713.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               94-223, gnl|bosTau2|chr27 (7862555-7862426)
               

               
               94-223, gnl|Hg17|chr4 (185931721-185931592)
               

               
               94-223, gnl|Mm7|chr8 (45410186-45410315)
               


               
               347-524, gnl|bosTau2|chr27 (7857848-7857671)
               

               
               347-524, gnl|Hg17|chr4 (185928244-185928067)
               

               
               347-524, gnl|Mm7|chr8 (45413245-45413422)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-223, gnl|bosTau2|chr27 (7862555-7862426)
               

               
               94-223, gnl|Hg17|chr4 (185931721-185931592)
               

               
               94-223, gnl|Mm7|chr8 (45410186-45410315)
               


               
               347-524, gnl|bosTau2|chr27 (7857848-7857671)
               

               
               347-524, gnl|Hg17|chr4 (185928244-185928067)
               

               
               347-524, gnl|Mm7|chr8 (45413245-45413422)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	94-223, gnl\|bosTau2\|chr27 (7862555-7862426)
	94-223, gnl\|Hg17\|chr4 (185931721-185931592)
	94-223, gnl\|Mm7\|chr8 (45410186-45410315)

	347-524, gnl\|bosTau2\|chr27 (7857848-7857671)
	347-524, gnl\|Hg17\|chr4 (185928244-185928067)
	347-524, gnl\|Mm7\|chr8 (45413245-45413422)