Non-Coding RNA Search

Ss1.1-Pey1-03H11.5

Sequence:


               
               GACTATGCTGAACGTGTTGACTTGACTTGAATGCCAAAGAACTTTTCCAGAGGAAAAACC
TGTTAAGTTCAAGTGTTAAAATTTTTAGATCGAAAAGAAGGCAAGTGGTGTCATAATCAA
CCATGAAGAATATGTACTTTCTTAAGATCTAAAGCATTAGAATTTGCTAAAAGCATTTTT
GGCTTTGAAATCTCCAAATGAAACTTTAAAAACTTATTTTGGTTTATCCCAAAATGATGG
AAAATGTCCAGTTGTGTTTTGTAAACACATTCATCTTTGAGTTTCCTTCATCTTCTTGAA
ATTTGTCTTTGCTTTTTGAGGGGAGGGAGTGGGGGACATAACTTTGATAATAATCCACTT
AGCTCCCATCCTAGGAGGTGGTGAGTTAGCTGCAAGAGAAAGGGGAAAGTGAGGCCGGCC
CAGCAATTCCCTAACCTGAAATTTAACCATCAGTAAGTACTGCAGCCTGCAACTTTGGGG
GCAAGTTTTGCATGATGATGAAAAAGTATCGTGTCATATTACTATCTTATCGTTGAATTT
TTTTTTTTTTTTAAAAAGGTAAGTTAGTGGTTGCTTTTAATGGGGCAGGGGAAGTAAATT
TTCTCTGTAAATTTAACTTAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTATGCTGAACGTGTTGACTTGACTTGAATGCCAAAGAACTTTTCCAGAGGAAAAACC
TGTTAAGTTCAAGTGTTAAAATTTTTAGATCGAAAAGAAGGCAAGTGGTGTCATAATCAA
CCATGAAGAATATGTACTTTCTTAAGATCTAAAGCATTAGAATTTGCTAAAAGCATTTTT
GGCTTTGAAATCTCCAAATGAAACTTTAAAAACTTATTTTGGTTTATCCCAAAATGATGG
AAAATGTCCAGTTGTGTTTTGTAAACACATTCATCTTTGAGTTTCCTTCATCTTCTTGAA
ATTTGTCTTTGCTTTTTGAGGGGAGGGAGTGGGGGACATAACTTTGATAATAATCCACTT
AGCTCCCATCCTAGGAGGTGGTGAGTTAGCTGCAAGAGAAAGGGGAAAGTGAGGCCGGCC
CAGCAATTCCCTAACCTGAAATTTAACCATCAGTAAGTACTGCAGCCTGCAACTTTGGGG
GCAAGTTTTGCATGATGATGAAAAAGTATCGTGTCATATTACTATCTTATCGTTGAATTT
TTTTTTTTTTTTAAAAAGGTAAGTTAGTGGTTGCTTTTAATGGGGCAGGGGAAGTAAATT
TTCTCTGTAAATTTAACTTAATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-260, + strand, RNAz p=0.672161

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-260, + strand, RNAz p=0.672161

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016255, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016255, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-455, gnl|bosTau2|chr23 (30222654-30222220)
               

               
               1-455, gnl|Hg17|chr6 (17716673-17717132)
               

               
               1-455, gnl|Mm7|chr13 (46157882-46158298)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-455, gnl|bosTau2|chr23 (30222654-30222220)
               

               
               1-455, gnl|Hg17|chr6 (17716673-17717132)
               

               
               1-455, gnl|Mm7|chr13 (46157882-46158298)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               mgp (0.230681)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               mgp (0.230681)
               

               
               ldo (0.0970026)

	1-455, gnl\|bosTau2\|chr23 (30222654-30222220)
	1-455, gnl\|Hg17\|chr6 (17716673-17717132)
	1-455, gnl\|Mm7\|chr13 (46157882-46158298)