Ss1.1-Pey1-06B10.5
|
AGGCTGAAGCAACTCCAAGGACACAGTTCACGGGCTGATTTCGTTTCTGAGCTCCAAAAT
ACGGATTGACTTGTGGACAATTATTAAGACGCTGTGGCCAATAATTTGAAGAGAGCCTGT
GAAGAAGGCAGCGAAGGACTTTGTATCACAAACCTTGTATCTCCATCTCCAGCATGTGCA
CTGGGAGCTGTGCCAAGTGCCTGGGGGGCACCCTCATTCCCCTCACTGTGTTTGGCTTCC
TGGCTAACATCCTGCTATTTTTCCCTGGAGGAAAAGTGATAGACAACAATGACCACCTTT
CCGATGAAGTCTGGCTTTTTGGAGGAATATTAGGAAGCGGAGTTTTGATGATCTTCCCTG
CACTGGTGTTCTTGGGCCTGAAGAACAATGACTGCTGTGGGTGCTGTGGCAACGAGAGCT
GCGGGAAGCGCTTCGCGATGTTCACCTCCACAATATTTGCCGTGGTTGGATTCTTGGGTG
CCGGATACTCATTTATCATCTCAGCCGTCTCAATCAACAAGGGGCCAAAATGTTTCATAG
CCAGGAATAGCACGTGGGGCTACCCTTTCCAGGACGGGGATTACCTCAGTAACCGGGATT
TATGGAGCAACTGCCAAAAGCCGGACAACGTGGTTCCCTGGAATCTGACCCTCTTCTCCA
TCCTGCTGATCACAGGAGGGGTCCAGATGCTTATCTGTGCCATCCAGGTGATCAATGGCC
TTCTGGGGACCCTGTGTGGAGACTGCCAGTGTTGTGGCTGCTGCAGGGGAGATGGACCAG
TCTGAACCTCTCTGATGAGCTGCTCTAACTTGATGGCGTGTGAGAAGATACATTCAATGC
TTTTCCCCTCCTGAGGTTACTAATTCCTATCTGCTTCCCAACTGACAAAGCTTAGGGAGG
CCAGAGTTAGTCCTTCTTTCCAACCAGCTGAGCTCAAGTTATAATTTTATGCTAGTTTCA
AATTAGAAAAAAAAATAGTTTTCACCACTTAAGTAATATTTATGAGTCTTACAAATTAGC
TTCCTTTTAGAATTGAAGAGCGGGTTCAAAGCAAATACTCCATCATTTTTTCTTTAAGAG
TGAAAACTGTATAAAGTCACAAGTACTGCCTTACTGCTTCTTTGTATATTGAGTTGTTAA
TATCTTTGGAAGTTTTACAGAAGTCACATGAGGAATGCACATTAAAAATAAAATGAGAAG
CTAAGACCAGTTTTTATTTTAAAGATTTATGGGAAAAAAAAGAATGACTGATGTATCATA
AATAATTTTTATTTGTTGTCTTTTGGGCTAACATGTTTGAATTACTTGTTACTAGTCTTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGCTGAAGCAACTCCAAGGACACAGTTCACGGGCTGATTTCGTTTCTGAGCTCCAAAAT
ACGGATTGACTTGTGGACAATTATTAAGACGCTGTGGCCAATAATTTGAAGAGAGCCTGT
GAAGAAGGCAGCGAAGGACTTTGTATCACAAACCTTGTATCTCCATCTCCAGCATGTGCA
CTGGGAGCTGTGCCAAGTGCCTGGGGGGCACCCTCATTCCCCTCACTGTGTTTGGCTTCC
TGGCTAACATCCTGCTATTTTTCCCTGGAGGAAAAGTGATAGACAACAATGACCACCTTT
CCGATGAAGTCTGGCTTTTTGGAGGAATATTAGGAAGCGGAGTTTTGATGATCTTCCCTG
CACTGGTGTTCTTGGGCCTGAAGAACAATGACTGCTGTGGGTGCTGTGGCAACGAGAGCT
GCGGGAAGCGCTTCGCGATGTTCACCTCCACAATATTTGCCGTGGTTGGATTCTTGGGTG
CCGGATACTCATTTATCATCTCAGCCGTCTCAATCAACAAGGGGCCAAAATGTTTCATAG
CCAGGAATAGCACGTGGGGCTACCCTTTCCAGGACGGGGATTACCTCAGTAACCGGGATT
TATGGAGCAACTGCCAAAAGCCGGACAACGTGGTTCCCTGGAATCTGACCCTCTTCTCCA
TCCTGCTGATCACAGGAGGGGTCCAGATGCTTATCTGTGCCATCCAGGTGATCAATGGCC
TTCTGGGGACCCTGTGTGGAGACTGCCAGTGTTGTGGCTGCTGCAGGGGAGATGGACCAG
TCTGAACCTCTCTGATGAGCTGCTCTAACTTGATGGCGTGTGAGAAGATACATTCAATGC
TTTTCCCCTCCTGAGGTTACTAATTCCTATCTGCTTCCCAACTGACAAAGCTTAGGGAGG
CCAGAGTTAGTCCTTCTTTCCAACCAGCTGAGCTCAAGTTATAATTTTATGCTAGTTTCA
AATTAGAAAAAAAAATAGTTTTCACCACTTAAGTAATATTTATGAGTCTTACAAATTAGC
TTCCTTTTAGAATTGAAGAGCGGGTTCAAAGCAAATACTCCATCATTTTTTCTTTAAGAG
TGAAAACTGTATAAAGTCACAAGTACTGCCTTACTGCTTCTTTGTATATTGAGTTGTTAA
TATCTTTGGAAGTTTTACAGAAGTCACATGAGGAATGCACATTAAAAATAAAATGAGAAG
CTAAGACCAGTTTTTATTTTAAAGATTTATGGGAAAAAAAAGAATGACTGATGTATCATA
AATAATTTTTATTTGTTGTCTTTTGGGCTAACATGTTTGAATTACTTGTTACTAGTCTTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-351, gnl|bosTau2|chr1 (75173709-75174058) |
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3-351, gnl|Hg17|chr3 (150675193-150675540) |
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3-351, gnl|Mm7|chr3 (57552510-57552847) |
| |
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437-578, gnl|bosTau2|chr1 (75186567-75186708) |
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437-578, gnl|canFam2|chr23 (47301500-47301661) |
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437-578, gnl|danRer3|chr22 (48413645-48413482) |
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437-578, gnl|dasNov1|scaffold_942 (160562-160400) |
|
437-578, gnl|echTel1|scaffold_179456 (14745-14910) |
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437-578, gnl|galGal2|chr9 (23282429-23282275) |
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437-578, gnl|hg17|chr3 (150688086-150688248) |
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437-578, gnl|Hg17|chr3 (150688103-150688241) |
|
437-578, gnl|loxAfr1|scaffold_6098 (22525-22363) |
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437-578, gnl|mm7|chr3 (57560755-57560912) |
|
437-578, gnl|Mm7|chr3 (57560767-57560905) |
|
437-578, gnl|oryCun1|scaffold_169826 (102732-102576) |
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437-578, gnl|panTro1|chr2_random (17142958-17143121) |
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437-578, gnl|rheMac2|chr2 (138307894-138307732) |
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437-578, gnl|rn3|chr2 (146627082-146627241) |
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437-578, gnl|tetNig1|chr1 (16803771-16803943) |
| |
|
767-1320, gnl|bosTau2|chr1 (75200874-75201418) |
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767-1320, gnl|Hg17|chr3 (150703160-150703698) |
|
767-1320, gnl|Mm7|chr3 (57568128-57568659) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-351, gnl|bosTau2|chr1 (75173709-75174058) |
|
3-351, gnl|Hg17|chr3 (150675193-150675540) |
|
3-351, gnl|Mm7|chr3 (57552510-57552847) |
| |
|
437-578, gnl|bosTau2|chr1 (75186567-75186708) |
|
437-578, gnl|canFam2|chr23 (47301500-47301661) |
|
437-578, gnl|danRer3|chr22 (48413645-48413482) |
|
437-578, gnl|dasNov1|scaffold_942 (160562-160400) |
|
437-578, gnl|echTel1|scaffold_179456 (14745-14910) |
|
437-578, gnl|galGal2|chr9 (23282429-23282275) |
|
437-578, gnl|hg17|chr3 (150688086-150688248) |
|
437-578, gnl|Hg17|chr3 (150688103-150688241) |
|
437-578, gnl|loxAfr1|scaffold_6098 (22525-22363) |
|
437-578, gnl|mm7|chr3 (57560755-57560912) |
|
437-578, gnl|Mm7|chr3 (57560767-57560905) |
|
437-578, gnl|oryCun1|scaffold_169826 (102732-102576) |
|
437-578, gnl|panTro1|chr2_random (17142958-17143121) |
|
437-578, gnl|rheMac2|chr2 (138307894-138307732) |
|
437-578, gnl|rn3|chr2 (146627082-146627241) |
|
437-578, gnl|tetNig1|chr1 (16803771-16803943) |
| |
|
767-1320, gnl|bosTau2|chr1 (75200874-75201418) |
|
767-1320, gnl|Hg17|chr3 (150703160-150703698) |
|
767-1320, gnl|Mm7|chr3 (57568128-57568659) |
|
cje (4.13087) |
|
duo (3.45602) |
|
sin (2.79916) |
|
lun (0.902935) |
|
jej (0.593531) |
|
eje (0.494169) |
|
ill (0.351185) |
|
nje (0.33184) |
|
pan (0.23596) |
|
cst (0.140036) |
|
cbl (0.114797) |
|
cje (4.13087) |
|
duo (3.45602) |
|
sin (2.79916) |
|
lun (0.902935) |
|
jej (0.593531) |
|
eje (0.494169) |
|
ill (0.351185) |
|
nje (0.33184) |
|
pan (0.23596) |
|
cst (0.140036) |
|
cbl (0.114797) |
