Non-Coding RNA Search

Ss1.1-Pey1-06C12.5

Sequence:


               
               AGAAGCAGACACCTCCAGTGAGCTGGCTAAGAAAAGCAAAGAAATATTCAGAAAAGAGAT
GTCCCAGTTCATCGTCCAGTGCCTGAACCCTTACCGGAAACCTGACTGCAAAGTGGGAAG
AATTACTACAACTGAAGACTTCAAACACCTAGCTCGCAAGCTGACTCATGGCGTTATGAA
TAAGGAGCTGAAGTACTGTAAGAACCCGGAGGACCTGGAGTGCAATGAGAATGTGAAACA
CAAAACCAAGGAGTACATTAAGAAGTATATGCAGAAGTTTGGGGCTGTTTACAAACCCAA
AGAGGATACTGAATTGGAGTGACCTACAGGGCCAGGGTGGGACAACAGGCGAGCTACCAG
TGGTAGGACAGAGTGGGGAGAAGAAATCCTGTGGGCCCTTTCTTCCCCCCTCCCCACCCC
ACCTCCACCCCTGTCAGGGCTGTGCTACTGATGACACATCACCCTGGGGAATGCAAACCT
GCAGATTTCAACTGAAAGCCACAAAAATGAGTTCAGTCTATAAGCAGTCCCTGGTTGTGA
GCTGTTGGTAGAGGCCATCAGAGGCAAGGGCTTGGGCCCTTGACACCTTCCCTTCTGAGA
CCCTGGCCAGGCCTGACCCCTCTCAAACCTGGGTCTCTTCCTTGGCGGTGCTGTCAGCGC
ACAGACTCATGCGCATCCCCACCCACGACCCTTTACCCTGACGATCTGTATTATATTTTA
ATGTATATGTGAATATATTGAAAATAATTTGTTTTTTCCTCGTTTTTGTTTTTTGTTTTG
CTTTTAGCCTCTACATGCTAGGATCACAGGAAGACTTTGTAAGGATGGTTTAAGTTCTCC
TGCAAGGTTTAATTTGTTATCATGTAAATATTTCAAAGCAGGCTGTCTTGTGGTTTTGGC
CAGCCTTGTGCTATGTTGATAAGATTGATTTACTGCTTAAAATCACTTTACTTTATTCAA
TTTTTACTGAACTTTTTATGTAAAAAATAAAATCAATTAAAGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCAGACACCTCCAGTGAGCTGGCTAAGAAAAGCAAAGAAATATTCAGAAAAGAGAT
GTCCCAGTTCATCGTCCAGTGCCTGAACCCTTACCGGAAACCTGACTGCAAAGTGGGAAG
AATTACTACAACTGAAGACTTCAAACACCTAGCTCGCAAGCTGACTCATGGCGTTATGAA
TAAGGAGCTGAAGTACTGTAAGAACCCGGAGGACCTGGAGTGCAATGAGAATGTGAAACA
CAAAACCAAGGAGTACATTAAGAAGTATATGCAGAAGTTTGGGGCTGTTTACAAACCCAA
AGAGGATACTGAATTGGAGTGACCTACAGGGCCAGGGTGGGACAACAGGCGAGCTACCAG
TGGTAGGACAGAGTGGGGAGAAGAAATCCTGTGGGCCCTTTCTTCCCCCCTCCCCACCCC
ACCTCCACCCCTGTCAGGGCTGTGCTACTGATGACACATCACCCTGGGGAATGCAAACCT
GCAGATTTCAACTGAAAGCCACAAAAATGAGTTCAGTCTATAAGCAGTCCCTGGTTGTGA
GCTGTTGGTAGAGGCCATCAGAGGCAAGGGCTTGGGCCCTTGACACCTTCCCTTCTGAGA
CCCTGGCCAGGCCTGACCCCTCTCAAACCTGGGTCTCTTCCTTGGCGGTGCTGTCAGCGC
ACAGACTCATGCGCATCCCCACCCACGACCCTTTACCCTGACGATCTGTATTATATTTTA
ATGTATATGTGAATATATTGAAAATAATTTGTTTTTTCCTCGTTTTTGTTTTTTGTTTTG
CTTTTAGCCTCTACATGCTAGGATCACAGGAAGACTTTGTAAGGATGGTTTAAGTTCTCC
TGCAAGGTTTAATTTGTTATCATGTAAATATTTCAAAGCAGGCTGTCTTGTGGTTTTGGC
CAGCCTTGTGCTATGTTGATAAGATTGATTTACTGCTTAAAATCACTTTACTTTATTCAA
TTTTTACTGAACTTTTTATGTAAAAAATAAAATCAATTAAAGAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61818821|ref|XP_594623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818821|ref|XP_594623.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               278-435, - strand, RNAz p=0.987703
               

               
               860-979, + strand, RNAz p=0.886805

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-435, - strand, RNAz p=0.987703
               

               
               860-979, + strand, RNAz p=0.886805

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY576988, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY576988, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               159-1004, gnl|bosTau2|chr22 (41077774-41076946)
               

               
               159-1004, gnl|Hg17|chr3 (47033750-47032930)
               

               
               159-1004, gnl|Mm7|chr9 (110315518-110316309)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-1004, gnl|bosTau2|chr22 (41077774-41076946)
               

               
               159-1004, gnl|Hg17|chr3 (47033750-47032930)
               

               
               159-1004, gnl|Mm7|chr9 (110315518-110316309)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cut (0.339847)
               

               
               cje (0.330469)
               

               
               hea (0.204499)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               hea (0.204499)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	278-435, - strand, RNAz p=0.987703
	860-979, + strand, RNAz p=0.886805

	159-1004, gnl\|bosTau2\|chr22 (41077774-41076946)
	159-1004, gnl\|Hg17\|chr3 (47033750-47032930)
	159-1004, gnl\|Mm7\|chr9 (110315518-110316309)

	cut (0.339847)
	cje (0.330469)
	hea (0.204499)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	che (0.136314)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)