Non-Coding RNA Search

Ss1.1-Pey1-08B01.5

Sequence:


               
               ATTACAACAAAAGGCATTATAATTTTGTTGGGGGTTAATTTTATGAAAATTATGCTCAAT
AAGAGTTGTATATTTAATATATTTGCAGTGAACACAGAATACTTTATGCATATTACTGAT
TTAATTTGAATATAGTTTTACAGCCTCCTTGACACCTATAATTTACAGATCAAAACTCAG
CAATAATTTGGGCAGCTAATGAATGTCATGAAAGCTGTAGAATCTACATCACCATCCATT
GCTTTAATTACATGAAAATGCTCTAGTGTTGTGATGCACTGCTGATATTTCCAATTCAGG
TACAAGTGTGTTTTAAAGAAGAAATAAGTTTCCCAATCAGCCAATTTAACTGGCTACCTG
TTACCTCAGCTGAGTTAGTTTAGGAAGTTTACATTCGTTTCTAATTCTATACTTGTTTTC
AGGGGTTTTTTAAACACATCCTATATATCATGTTAATCTGGCAAGAAATATGACTTGCTT
TTTGCTGAGCTTAACTCCAAAGTCAGTAAAAAAATAAGTCATAAAATAATCCTGTGTCAT
GTGACTTTGGCACCCTCTTGACATACTTAGTTTTAACTCTTTGAAGTTTGGCCTCCTATT
AGAAATAATTATGTCTCAGATGAGTAATGTCTGTTTCCAGGGTTCAGAAAAGGCAAACTC
ATGAAATGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACAACAAAAGGCATTATAATTTTGTTGGGGGTTAATTTTATGAAAATTATGCTCAAT
AAGAGTTGTATATTTAATATATTTGCAGTGAACACAGAATACTTTATGCATATTACTGAT
TTAATTTGAATATAGTTTTACAGCCTCCTTGACACCTATAATTTACAGATCAAAACTCAG
CAATAATTTGGGCAGCTAATGAATGTCATGAAAGCTGTAGAATCTACATCACCATCCATT
GCTTTAATTACATGAAAATGCTCTAGTGTTGTGATGCACTGCTGATATTTCCAATTCAGG
TACAAGTGTGTTTTAAAGAAGAAATAAGTTTCCCAATCAGCCAATTTAACTGGCTACCTG
TTACCTCAGCTGAGTTAGTTTAGGAAGTTTACATTCGTTTCTAATTCTATACTTGTTTTC
AGGGGTTTTTTAAACACATCCTATATATCATGTTAATCTGGCAAGAAATATGACTTGCTT
TTTGCTGAGCTTAACTCCAAAGTCAGTAAAAAAATAAGTCATAAAATAATCCTGTGTCAT
GTGACTTTGGCACCCTCTTGACATACTTAGTTTTAACTCTTTGAAGTTTGGCCTCCTATT
AGAAATAATTATGTCTCAGATGAGTAATGTCTGTTTCCAGGGTTCAGAAAAGGCAAACTC
ATGAAATGCCAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.935482
               

               
               440-559, + strand, RNAz p=0.995195

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.935482
               

               
               440-559, + strand, RNAz p=0.995195

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               448-545, + strand, RNAmicro p=0.981057

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               448-545, + strand, RNAmicro p=0.981057

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_025134, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_025134, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr18 (21090611-21091279)
               

               
               1-672, gnl|Hg17|chr16 (51916531-51917200)
               

               
               1-672, gnl|Mm7|chr8 (89644759-89645424)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr18 (21090611-21091279)
               

               
               1-672, gnl|Hg17|chr16 (51916531-51917200)
               

               
               1-672, gnl|Mm7|chr8 (89644759-89645424)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	120-239, - strand, RNAz p=0.935482
	440-559, + strand, RNAz p=0.995195

	1-672, gnl\|bosTau2\|chr18 (21090611-21091279)
	1-672, gnl\|Hg17\|chr16 (51916531-51917200)
	1-672, gnl\|Mm7\|chr8 (89644759-89645424)