Non-Coding RNA Search

Ss1.1-Pey1-08F08.5

Sequence:


               
               CCAGGATTTTACATCCACCTTACCTCCACTTTCTAGAACATACTCTACTAATGTTATCAG
AACCAATTTCTACTTCATACAGATGTTTTTGCAACAGCAGTTAAAGTTTTCCTTCCACAA
GTCAAGTCCTCTAATGATTGCAGTTATCCATTTTGTGCGTTACTATTTTAACATTGCTTC
CTAAACTTGTATTATTTTAATTGATTCGTTCCTCTCCATGGTATCTCCCCTCCCAACCAC
ACCCCCTCAGTAAAGCAATACACTATTACACTGTGGGTTTATGCTATTCTTATACCCCAG
AGGGGGGAGGAGGGGATAGAGCCTGGGCTTCATTTTCTTTTAAGGTCAGGGGAGTTTGGC
CTTTTCATAAGAATGAGCTCTTTTGGAGAAAGTAACAAAAATAAGGTCATATCAATGAGG
AAAGAAGACATAGATTGATGCTAGGGAATATTGGCAGAACTGAATAGAAATCACATGCCA
TTCTGTAGCTCTCATGCCCACCCCATTAAATGAGATTACCTTCTCAGGAGTACCATGCCT
TTACTAACTGGCTAAGTGGTAGTGTAAAAGAATTATTATCAATATACTGTATTTATTAGG
AGTTTTAAGATAAAGGTTGTGTTGGATTCAACAAATCAGATAAGCTCAGATGATTCACGT
TAACTTTATTTTTGCAGCCATTTCCACTAATTTCTATTAATGATATGCCATAAACTTTGG
TTCAAAGCAAAATCAATGTCTTTGCCGTCTTGTGACTTCGATGCATGTGATAGTCTAAGA
GTTCCTCTTACTGGTGTTCTTTTCACTGTGGTTTCATGAGAGCAAGTGAAACTGCCTAGA
ATGAGAACTGTTCGGGTTATTCAGACATACTCAGTGAAGCAGACATAACAAAATTCCAAA
ATGGTCAATGGGAAAATGACTAGAAATACAGACTGAAAAGAGTTGGCATCTTTTAGATAT
ATTTGCAAAACACTGATATTTAGGCAGCTGAGAAAAGAACAAAGTTGATTTAATTTTGTA
TTTCTTTTTGTCCTCAAACAAAATTTTTAATTCTCTCTGGATTGATGCAGTGATGTTTTT
GTTCCTTCCGTATTTATAAATGACACTTTTTTTTAGTGTTTTTGAACATAAAATCTACTT
GGTTTGAAATCAAGTGGTTGGAACACTTGACTTTATTTTAAGCACGTTGTTGATTCAAAG
TTTCATTGAAGAAGCTTTCAATCAATGGGTCAGTCTGATTCTGTAATTAGCACACAGTAC
CTAATGTTTTGGTGCTATTATGAGGACCAATGCTCAAAAGTGGATTTTGTTCTTGAACAG
CGTCCCAGTAGATTTGATGACATTTGTTGGCTTGAGGTCTGATTTTTTTCCCCCCCAATA
GATTTAAGATTTCTATTTAAGGTTGAAAAACTGCACAAATTTGTACGGAACAAAGCCTAG
AAAAATGAAAACTATAGATTGAATAGTAATTTAAATTAATCCTAGTATGTATGATAGAGG
AGGGAAAATTTTGGTGCCATAATTTCTCTCTTCATGGTGTTGGACTTAAATCAGTTGAAA
TGTATTTCTGTACCACAATTTAAGCTTCAATAAAAGTTTGCTTAATTCATTGTCTAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGATTTTACATCCACCTTACCTCCACTTTCTAGAACATACTCTACTAATGTTATCAG
AACCAATTTCTACTTCATACAGATGTTTTTGCAACAGCAGTTAAAGTTTTCCTTCCACAA
GTCAAGTCCTCTAATGATTGCAGTTATCCATTTTGTGCGTTACTATTTTAACATTGCTTC
CTAAACTTGTATTATTTTAATTGATTCGTTCCTCTCCATGGTATCTCCCCTCCCAACCAC
ACCCCCTCAGTAAAGCAATACACTATTACACTGTGGGTTTATGCTATTCTTATACCCCAG
AGGGGGGAGGAGGGGATAGAGCCTGGGCTTCATTTTCTTTTAAGGTCAGGGGAGTTTGGC
CTTTTCATAAGAATGAGCTCTTTTGGAGAAAGTAACAAAAATAAGGTCATATCAATGAGG
AAAGAAGACATAGATTGATGCTAGGGAATATTGGCAGAACTGAATAGAAATCACATGCCA
TTCTGTAGCTCTCATGCCCACCCCATTAAATGAGATTACCTTCTCAGGAGTACCATGCCT
TTACTAACTGGCTAAGTGGTAGTGTAAAAGAATTATTATCAATATACTGTATTTATTAGG
AGTTTTAAGATAAAGGTTGTGTTGGATTCAACAAATCAGATAAGCTCAGATGATTCACGT
TAACTTTATTTTTGCAGCCATTTCCACTAATTTCTATTAATGATATGCCATAAACTTTGG
TTCAAAGCAAAATCAATGTCTTTGCCGTCTTGTGACTTCGATGCATGTGATAGTCTAAGA
GTTCCTCTTACTGGTGTTCTTTTCACTGTGGTTTCATGAGAGCAAGTGAAACTGCCTAGA
ATGAGAACTGTTCGGGTTATTCAGACATACTCAGTGAAGCAGACATAACAAAATTCCAAA
ATGGTCAATGGGAAAATGACTAGAAATACAGACTGAAAAGAGTTGGCATCTTTTAGATAT
ATTTGCAAAACACTGATATTTAGGCAGCTGAGAAAAGAACAAAGTTGATTTAATTTTGTA
TTTCTTTTTGTCCTCAAACAAAATTTTTAATTCTCTCTGGATTGATGCAGTGATGTTTTT
GTTCCTTCCGTATTTATAAATGACACTTTTTTTTAGTGTTTTTGAACATAAAATCTACTT
GGTTTGAAATCAAGTGGTTGGAACACTTGACTTTATTTTAAGCACGTTGTTGATTCAAAG
TTTCATTGAAGAAGCTTTCAATCAATGGGTCAGTCTGATTCTGTAATTAGCACACAGTAC
CTAATGTTTTGGTGCTATTATGAGGACCAATGCTCAAAAGTGGATTTTGTTCTTGAACAG
CGTCCCAGTAGATTTGATGACATTTGTTGGCTTGAGGTCTGATTTTTTTCCCCCCCAATA
GATTTAAGATTTCTATTTAAGGTTGAAAAACTGCACAAATTTGTACGGAACAAAGCCTAG
AAAAATGAAAACTATAGATTGAATAGTAATTTAAATTAATCCTAGTATGTATGATAGAGG
AGGGAAAATTTTGGTGCCATAATTTCTCTCTTCATGGTGTTGGACTTAAATCAGTTGAAA
TGTATTTCTGTACCACAATTTAAGCTTCAATAAAAGTTTGCTTAATTCATTGTCTAGTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-268, gnl|bosTau2|chr11 (10114663-10114931)
               

               
               1-268, gnl|Hg17|chr6 (111321944-111322210)
               

               
               1-268, gnl|Mm7|chr10 (35490133-35489888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-268, gnl|bosTau2|chr11 (10114663-10114931)
               

               
               1-268, gnl|Hg17|chr6 (111321944-111322210)
               

               
               1-268, gnl|Mm7|chr10 (35490133-35489888)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               tra (0.492368)
               

               
               fco (0.471624)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               fco (0.471624)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-268, gnl\|bosTau2\|chr11 (10114663-10114931)
	1-268, gnl\|Hg17\|chr6 (111321944-111322210)
	1-268, gnl\|Mm7\|chr10 (35490133-35489888)

	tra (0.492368)
	fco (0.471624)
	hea (0.408998)
	pla (0.401016)
	aor (0.390549)
	spc (0.340097)
	tbr (0.308356)
	sme (0.305437)
	isp (0.300752)
	bfe (0.299715)
	ski (0.29347)
	liv (0.292569)
	lin (0.291206)
	bla (0.248694)
	pgl (0.236967)
	cty (0.20816)
	fli (0.202881)
	fcc (0.197785)
	sag (0.182715)
	mgm (0.180343)
	fhi (0.169578)
	fat (0.147427)
	hyp (0.142837)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)