Ss1.1-Pey1-09A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTATCTACACATTTAGGGCCCACATTGGTCCTGTTCTATCATTAGCTATTAGTTCTAATG GTGAACAGTGTTTTAGTGGTGGTATTGATGCAACTATCCAGTGGTGGAATATGCCTAGTC CTAATGTGGATCCATATGATACATATGAGCCAAATGTTCTAGCTGGCACTTTAGTTGCTC ATACAGATGCTGTCTGGGGTCTTGCTTATAGTGGCATAAAAAATCAATTACTATCTTGTT CAGCAGATGGCACTATTAGGTTATGGAATCCACAAGAAAAATTGCCATGTATTTGCACTT ACAACGGAGACAAGGAACATGGAATACCTACATCAGTTGACTTTATAGGCTGTGATCCAG CTCATATGGTGACCTCATTCAACACTGGTAGTACAGTAATTTATGATTTAGAAACATCAC AGTCGTTGGTGATGCTTTCATCACAGATAGAGTCTGGTTTACAATCCAATAATCACATTA ACAGAGTAGTAAGTCATCCCACACTTCCTGTTACAATAACTGCTCATGAAGATAGACACA TCAAATTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAGCTCATTTGGATG CTGTTACAAGTCTAGCAGTAGATCCTAATGGAATCTATTTGATGTCTGGAAGCCATGACT GTTCTATTAGATTGTGGAATCTGGACAGCAAGACATGTGTGCAAGAAATAACAGCACATA GGAAGAAATTAGATGAATCAATTTATGATGTTGCTTTCCATCCATCAAAAGCATATATTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTATCTACACATTTAGGGCCCACATTGGTCCTGTTCTATCATTAGCTATTAGTTCTAATG GTGAACAGTGTTTTAGTGGTGGTATTGATGCAACTATCCAGTGGTGGAATATGCCTAGTC CTAATGTGGATCCATATGATACATATGAGCCAAATGTTCTAGCTGGCACTTTAGTTGCTC ATACAGATGCTGTCTGGGGTCTTGCTTATAGTGGCATAAAAAATCAATTACTATCTTGTT CAGCAGATGGCACTATTAGGTTATGGAATCCACAAGAAAAATTGCCATGTATTTGCACTT ACAACGGAGACAAGGAACATGGAATACCTACATCAGTTGACTTTATAGGCTGTGATCCAG CTCATATGGTGACCTCATTCAACACTGGTAGTACAGTAATTTATGATTTAGAAACATCAC AGTCGTTGGTGATGCTTTCATCACAGATAGAGTCTGGTTTACAATCCAATAATCACATTA ACAGAGTAGTAAGTCATCCCACACTTCCTGTTACAATAACTGCTCATGAAGATAGACACA TCAAATTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAGCTCATTTGGATG CTGTTACAAGTCTAGCAGTAGATCCTAATGGAATCTATTTGATGTCTGGAAGCCATGACT GTTCTATTAGATTGTGGAATCTGGACAGCAAGACATGTGTGCAAGAAATAACAGCACATA GGAAGAAATTAGATGAATCAATTTATGATGTTGCTTTCCATCCATCAAAAGCATATATTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 315-458, + strand, RNAz p=0.780784 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 315-458, + strand, RNAz p=0.780784 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 147-313, gnl|bosTau2|chr21 (26182273-26182107) | |
| 147-313, gnl|canFam2|chr8 (13247911-13248120) | |
| 147-313, gnl|danRer3|chr17 (36507755-36507954) | |
| 147-313, gnl|dasNov1|scaffold_1793 (43840-43633) | |
| 147-313, gnl|echTel1|scaffold_301065 (3160-3359) | |
| 147-313, gnl|fr1|chrUn (223693857-223694047) | |
| 147-313, gnl|galGal2|chr5 (31148219-31148416) | |
| 147-313, gnl|hg17|chr14 (30445813-30446021) | |
| 147-313, gnl|Hg17|chr14 (30446002-30445836) | |
| 147-313, gnl|loxAfr1|scaffold_24708 (22322-22525) | |
| 147-313, gnl|mm7|chr12 (49636014-49636210) | |
| 147-313, gnl|Mm7|chr12 (49636196-49636030) | |
| 147-313, gnl|monDom2|scaffold_53 (3544924-3545140) | |
| 147-313, gnl|oryCun1|scaffold_197819 (55686-55479) | |
| 147-313, gnl|panTro1|chr15 (29584946-29585154) | |
| 147-313, gnl|rheMac2|chr7 (93852339-93852543) | |
| 147-313, gnl|rn3|chr6 (71730759-71730962) | |
| 147-313, gnl|tetNig1|chr17 (2160851-2160672) | |
| 147-313, gnl|xenTro1|scaffold_271 (1221662-1221472) | |
| 315-458, gnl|bosTau2|chr21 (26180254-26180111) | |
| 315-458, gnl|Hg17|chr14 (30444516-30444373) | |
| 315-458, gnl|Mm7|chr12 (49634773-49634630) | |
| 652-780, gnl|bosTau2|chr21 (26171323-26171195) | |
| 652-780, gnl|canFam2|chr8 (13236823-13237028) | |
| 652-780, gnl|danRer3|chr17 (36504999-36505205) | |
| 652-780, gnl|dasNov1|scaffold_1793 (65686-65480) | |
| 652-780, gnl|echTel1|scaffold_214710 (8634-8839) | |
| 652-780, gnl|fr1|chrUn (223692987-223693160) | |
| 652-780, gnl|galGal2|chr5 (31144500-31144704) | |
| 652-780, gnl|hg17|chr14 (30434368-30434570) | |
| 652-780, gnl|Hg17|chr14 (30434537-30434409) | |
| 652-780, gnl|loxAfr1|scaffold_24708 (12621-12829) | |
| 652-780, gnl|mm7|chr12 (49622955-49623163) | |
| 652-780, gnl|Mm7|chr12 (49623124-49622996) | |
| 652-780, gnl|monDom2|scaffold_53 (3534807-3535018) | |
| 652-780, gnl|oryCun1|scaffold_201677 (49023-49220) | |
| 652-780, gnl|panTro1|chr15 (29573156-29573358) | |
| 652-780, gnl|rheMac2|chr7 (93840760-93840962) | |
| 652-780, gnl|rn3|chr6 (71713654-71713855) | |
| 652-780, gnl|tetNig1|chrUn_random (83182229-83182039) | |
| 652-780, gnl|xenTro1|scaffold_271 (1224788-1224587) | |
| 654-778, gnl|bosTau2|chr19 (36311990-36311866) | |
| 654-778, gnl|canFam2|chr17 (32376959-32377155) | |
| 654-778, gnl|danRer3|chr9 (5357264-5357090) | |
| 654-778, gnl|dasNov1|scaffold_25979 (12445-12640) | |
| 654-778, gnl|echTel1|scaffold_322978 (81364-81558) | |
| 654-778, gnl|fr1|chrUn (15192223-15192413) | |
| 654-778, gnl|galGal2|chr3 (28431354-28431158) | |
| 654-778, gnl|hg17|chr2 (36988228-36988424) | |
| 654-778, gnl|Hg17|chr2 (36988417-36988293) | |
| 654-778, gnl|loxAfr1|scaffold_20133 (22800-22996) | |
| 654-778, gnl|mm7|chr17 (76956022-76956218) | |
| 654-778, gnl|Mm7|chr17 (76956211-76956087) | |
| 654-778, gnl|monDom2|scaffold_1 (135148200-135148004) | |
| 654-778, gnl|oryCun1|scaffold_211919 (3513-3317) | |
| 654-778, gnl|panTro1|chr12 (38442927-38443123) | |
| 654-778, gnl|rheMac2|chr13 (36827560-36827756) | |
| 654-778, gnl|rn3|chr6 (1429120-1429316) | |
| 654-778, gnl|tetNig1|chr17 (2161708-2161512) | |
| 654-778, gnl|xenTro1|scaffold_303 (1289836-1290029) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-313, gnl|bosTau2|chr21 (26182273-26182107) | |
| 147-313, gnl|canFam2|chr8 (13247911-13248120) | |
| 147-313, gnl|danRer3|chr17 (36507755-36507954) | |
| 147-313, gnl|dasNov1|scaffold_1793 (43840-43633) | |
| 147-313, gnl|echTel1|scaffold_301065 (3160-3359) | |
| 147-313, gnl|fr1|chrUn (223693857-223694047) | |
| 147-313, gnl|galGal2|chr5 (31148219-31148416) | |
| 147-313, gnl|hg17|chr14 (30445813-30446021) | |
| 147-313, gnl|Hg17|chr14 (30446002-30445836) | |
| 147-313, gnl|loxAfr1|scaffold_24708 (22322-22525) | |
| 147-313, gnl|mm7|chr12 (49636014-49636210) | |
| 147-313, gnl|Mm7|chr12 (49636196-49636030) | |
| 147-313, gnl|monDom2|scaffold_53 (3544924-3545140) | |
| 147-313, gnl|oryCun1|scaffold_197819 (55686-55479) | |
| 147-313, gnl|panTro1|chr15 (29584946-29585154) | |
| 147-313, gnl|rheMac2|chr7 (93852339-93852543) | |
| 147-313, gnl|rn3|chr6 (71730759-71730962) | |
| 147-313, gnl|tetNig1|chr17 (2160851-2160672) | |
| 147-313, gnl|xenTro1|scaffold_271 (1221662-1221472) | |
| 315-458, gnl|bosTau2|chr21 (26180254-26180111) | |
| 315-458, gnl|Hg17|chr14 (30444516-30444373) | |
| 315-458, gnl|Mm7|chr12 (49634773-49634630) | |
| 652-780, gnl|bosTau2|chr21 (26171323-26171195) | |
| 652-780, gnl|canFam2|chr8 (13236823-13237028) | |
| 652-780, gnl|danRer3|chr17 (36504999-36505205) | |
| 652-780, gnl|dasNov1|scaffold_1793 (65686-65480) | |
| 652-780, gnl|echTel1|scaffold_214710 (8634-8839) | |
| 652-780, gnl|fr1|chrUn (223692987-223693160) | |
| 652-780, gnl|galGal2|chr5 (31144500-31144704) | |
| 652-780, gnl|hg17|chr14 (30434368-30434570) | |
| 652-780, gnl|Hg17|chr14 (30434537-30434409) | |
| 652-780, gnl|loxAfr1|scaffold_24708 (12621-12829) | |
| 652-780, gnl|mm7|chr12 (49622955-49623163) | |
| 652-780, gnl|Mm7|chr12 (49623124-49622996) | |
| 652-780, gnl|monDom2|scaffold_53 (3534807-3535018) | |
| 652-780, gnl|oryCun1|scaffold_201677 (49023-49220) | |
| 652-780, gnl|panTro1|chr15 (29573156-29573358) | |
| 652-780, gnl|rheMac2|chr7 (93840760-93840962) | |
| 652-780, gnl|rn3|chr6 (71713654-71713855) | |
| 652-780, gnl|tetNig1|chrUn_random (83182229-83182039) | |
| 652-780, gnl|xenTro1|scaffold_271 (1224788-1224587) | |
| 654-778, gnl|bosTau2|chr19 (36311990-36311866) | |
| 654-778, gnl|canFam2|chr17 (32376959-32377155) | |
| 654-778, gnl|danRer3|chr9 (5357264-5357090) | |
| 654-778, gnl|dasNov1|scaffold_25979 (12445-12640) | |
| 654-778, gnl|echTel1|scaffold_322978 (81364-81558) | |
| 654-778, gnl|fr1|chrUn (15192223-15192413) | |
| 654-778, gnl|galGal2|chr3 (28431354-28431158) | |
| 654-778, gnl|hg17|chr2 (36988228-36988424) | |
| 654-778, gnl|Hg17|chr2 (36988417-36988293) | |
| 654-778, gnl|loxAfr1|scaffold_20133 (22800-22996) | |
| 654-778, gnl|mm7|chr17 (76956022-76956218) | |
| 654-778, gnl|Mm7|chr17 (76956211-76956087) | |
| 654-778, gnl|monDom2|scaffold_1 (135148200-135148004) | |
| 654-778, gnl|oryCun1|scaffold_211919 (3513-3317) | |
| 654-778, gnl|panTro1|chr12 (38442927-38443123) | |
| 654-778, gnl|rheMac2|chr13 (36827560-36827756) | |
| 654-778, gnl|rn3|chr6 (1429120-1429316) | |
| 654-778, gnl|tetNig1|chr17 (2161708-2161512) | |
| 654-778, gnl|xenTro1|scaffold_303 (1289836-1290029) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ste (0.270416) | |
| nlu (0.191681) | |
| sug (0.127291) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.270416) | |
| nlu (0.191681) | |
| sug (0.127291) | |
| cty (0.10408) | |
| ldo (0.0970026) |