Ss1.1-Pey1-09H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGTATCTTTCATTGAATGTGGGAATGCATTAGAGAAAAATGCTCAGGAATCCAAATCC CCATTCCTTATGTATTCCGAGACAGTGGAGCTCATCAAGTATACCATGAAGCTAAAGAAT TACTTGGCACCAGATGCTACAGCTGCAGATAAAAGACTCACAGTACTTTGCCTGCGATGC CAGTCTCTGCTGTACCTGAGGCTCTTCAAACTGAAGAAGGAAACTGCTCTGAAGTATTCA AAGACGCTGACAGAGCACCTGAAGAATTCCTATAATAATTCTCAAGCGCCATCACCAGGC TTAGGAAGCAAAGCTGTTGGGATGCCCTCTCCTGTTTCTCCAAAGTTGAGGTTACATCCA ACTTCCTCTACGTAGCTGGCTGCCATGTGGTGGATCCTCTGTGGAATGGTCACTGATGAA CCACTTGCTGAGCACCACATGGCAGCCAGCTACGTTCAGGTTACATCCAACTTCCTCTAC GCCACTGAAATTTGGGACCAAGCTGAACAGCTTTCCAAAGAGCAAAAAGAATTCTTTGCT GAACTGGATAAAGTAATGGGCCCTCTCATCTTTAACGCAAGCATCATGACAGACCTAGTT CGTTACACCCGGCAGGGACTGCACTGGCTTCGCCAGGACGCCAAGTTGATATCCTGAACT GAACACATTATCGTTGCCTCTGGTTTTCTCCACAACACTGTGTCACATCACGAAGGAAAA CTGCCATAACACACCACCTAGTCGACACTAAGAATGAGGAATGGTTTTCTCCTCCCTGGT TCATGTGTTGTTTTTTTATTGCCCAAAGCCGTCAAGTCATTTGACCCCTTCAATATTCCC AATATGAAAAATTATTTAAATGCTTCTAAATCTGCAGCACATTGATAAGATGGTTTCAGT TATCTATAGTAAGATTGAAATTTCCATTGTAATTCATAACTAATCAGATGAAATTCTATT TATTTTAATTTTTAAACTTCCCAGATTGGGGCTAGTTTGAGGTTATTTCTGCCTATAAAT TTACTCTGTTGAATATTTTTGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGTATCTTTCATTGAATGTGGGAATGCATTAGAGAAAAATGCTCAGGAATCCAAATCC CCATTCCTTATGTATTCCGAGACAGTGGAGCTCATCAAGTATACCATGAAGCTAAAGAAT TACTTGGCACCAGATGCTACAGCTGCAGATAAAAGACTCACAGTACTTTGCCTGCGATGC CAGTCTCTGCTGTACCTGAGGCTCTTCAAACTGAAGAAGGAAACTGCTCTGAAGTATTCA AAGACGCTGACAGAGCACCTGAAGAATTCCTATAATAATTCTCAAGCGCCATCACCAGGC TTAGGAAGCAAAGCTGTTGGGATGCCCTCTCCTGTTTCTCCAAAGTTGAGGTTACATCCA ACTTCCTCTACGTAGCTGGCTGCCATGTGGTGGATCCTCTGTGGAATGGTCACTGATGAA CCACTTGCTGAGCACCACATGGCAGCCAGCTACGTTCAGGTTACATCCAACTTCCTCTAC GCCACTGAAATTTGGGACCAAGCTGAACAGCTTTCCAAAGAGCAAAAAGAATTCTTTGCT GAACTGGATAAAGTAATGGGCCCTCTCATCTTTAACGCAAGCATCATGACAGACCTAGTT CGTTACACCCGGCAGGGACTGCACTGGCTTCGCCAGGACGCCAAGTTGATATCCTGAACT GAACACATTATCGTTGCCTCTGGTTTTCTCCACAACACTGTGTCACATCACGAAGGAAAA CTGCCATAACACACCACCTAGTCGACACTAAGAATGAGGAATGGTTTTCTCCTCCCTGGT TCATGTGTTGTTTTTTTATTGCCCAAAGCCGTCAAGTCATTTGACCCCTTCAATATTCCC AATATGAAAAATTATTTAAATGCTTCTAAATCTGCAGCACATTGATAAGATGGTTTCAGT TATCTATAGTAAGATTGAAATTTCCATTGTAATTCATAACTAATCAGATGAAATTCTATT TATTTTAATTTTTAAACTTCCCAGATTGGGGCTAGTTTGAGGTTATTTCTGCCTATAAAT TTACTCTGTTGAATATTTTTGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 687-803, - strand, RNAz p=0.905335 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 687-803, - strand, RNAz p=0.905335 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-101, gnl|bosTau2|chr7 (28517750-28517650) | |
| 1-101, gnl|canFam2|chr11 (24176980-24177102) | |
| 1-101, gnl|danRer3|chr21 (39652632-39652754) | |
| 1-101, gnl|dasNov1|scaffold_1123 (95429-95309) | |
| 1-101, gnl|echTel1|scaffold_102150 (1455-1577) | |
| 1-101, gnl|fr1|chrUn (207307714-207307836) | |
| 1-101, gnl|galGal2|chr13 (16111707-16111829) | |
| 1-101, gnl|hg17|chr5 (132251430-132251552) | |
| 1-101, gnl|Hg17|chr5 (132251534-132251434) | |
| 1-101, gnl|loxAfr1|scaffold_140445 (696-574) | |
| 1-101, gnl|mm7|chr11 (53364959-53364837) | |
| 1-101, gnl|Mm7|chr11 (53364853-53364953) | |
| 1-101, gnl|monDom2|scaffold_6 (92335373-92335251) | |
| 1-101, gnl|oryCun1|scaffold_204311 (46433-46555) | |
| 1-101, gnl|panTro1|chr4 (138590339-138590461) | |
| 1-101, gnl|rheMac2|chr6 (129292733-129292855) | |
| 1-101, gnl|rn3|chr10 (38874345-38874223) | |
| 1-101, gnl|tetNig1|chr7 (8966556-8966678) | |
| 1-101, gnl|xenTro1|scaffold_473 (848599-848719) | |
| 528-1039, gnl|bosTau2|chr7 (28508346-28507835) | |
| 528-1039, gnl|Hg17|chr5 (132244779-132244261) | |
| 528-1039, gnl|Mm7|chr11 (53372143-53372647) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-101, gnl|bosTau2|chr7 (28517750-28517650) | |
| 1-101, gnl|canFam2|chr11 (24176980-24177102) | |
| 1-101, gnl|danRer3|chr21 (39652632-39652754) | |
| 1-101, gnl|dasNov1|scaffold_1123 (95429-95309) | |
| 1-101, gnl|echTel1|scaffold_102150 (1455-1577) | |
| 1-101, gnl|fr1|chrUn (207307714-207307836) | |
| 1-101, gnl|galGal2|chr13 (16111707-16111829) | |
| 1-101, gnl|hg17|chr5 (132251430-132251552) | |
| 1-101, gnl|Hg17|chr5 (132251534-132251434) | |
| 1-101, gnl|loxAfr1|scaffold_140445 (696-574) | |
| 1-101, gnl|mm7|chr11 (53364959-53364837) | |
| 1-101, gnl|Mm7|chr11 (53364853-53364953) | |
| 1-101, gnl|monDom2|scaffold_6 (92335373-92335251) | |
| 1-101, gnl|oryCun1|scaffold_204311 (46433-46555) | |
| 1-101, gnl|panTro1|chr4 (138590339-138590461) | |
| 1-101, gnl|rheMac2|chr6 (129292733-129292855) | |
| 1-101, gnl|rn3|chr10 (38874345-38874223) | |
| 1-101, gnl|tetNig1|chr7 (8966556-8966678) | |
| 1-101, gnl|xenTro1|scaffold_473 (848599-848719) | |
| 528-1039, gnl|bosTau2|chr7 (28508346-28507835) | |
| 528-1039, gnl|Hg17|chr5 (132244779-132244261) | |
| 528-1039, gnl|Mm7|chr11 (53372143-53372647) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |