Non-Coding RNA Search

Ss1.1-Pey1-09H10.5

Sequence:


               
               GCCCCAAGTGATCATCACAGTAGTTACTAGCCCGCCTGTGAATATCTCTGTACGTATTTG
GGTGTACTCGTGGGTCTGTATCTCCGTTTCTTTGGTGAGAACGGGGGTGTAGCTGTGAGG
TCTTCAAGGGTATGTGTCCCTCTGTGGCTCAGCCACAGAGATGGGGACTTTGCTGTTTTA
AGGGAAAGCGTTCTTTCATTCCCTTTGTACAAACCAAGATTCGGTTGTTCTGAGACTACG
GGGTGCAGGTTTGAGCCCCCAAATCTGGAGAGATGTCACAGAGCTGGGGCAGGTCCAGGG
GACAAGTGAGTCAGTGAGCATGTGTGTTGGGAAAGACGCAGTTCTTGGGGACAAGGAGAG
GGCCGACTGAGATCAAACCATGAAGAGAGGGAAGGAATTCTGCCCTGGGGAGCAGCCCCC
TCCCCACCAGGTTAGATGAAGTCTTCCCCCCCGCCCCCCAGCCTCTTGGCCCTGCAGGCA
TTTGCCAGCGGGCCGGAACCTTGATCTCCCCAGAATACCTTTCCGAAGCGCCCCTCACAG
TCAGAGCCAGCCACAAAGTCCCCAGGGGCAGAAGGGCTCCATTCATTGATGCATGGGCTG
TAATACCAGCCTTCATGGGCGCCCTGGCCTGCACCCCAGATCCTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCAAGTGATCATCACAGTAGTTACTAGCCCGCCTGTGAATATCTCTGTACGTATTTG
GGTGTACTCGTGGGTCTGTATCTCCGTTTCTTTGGTGAGAACGGGGGTGTAGCTGTGAGG
TCTTCAAGGGTATGTGTCCCTCTGTGGCTCAGCCACAGAGATGGGGACTTTGCTGTTTTA
AGGGAAAGCGTTCTTTCATTCCCTTTGTACAAACCAAGATTCGGTTGTTCTGAGACTACG
GGGTGCAGGTTTGAGCCCCCAAATCTGGAGAGATGTCACAGAGCTGGGGCAGGTCCAGGG
GACAAGTGAGTCAGTGAGCATGTGTGTTGGGAAAGACGCAGTTCTTGGGGACAAGGAGAG
GGCCGACTGAGATCAAACCATGAAGAGAGGGAAGGAATTCTGCCCTGGGGAGCAGCCCCC
TCCCCACCAGGTTAGATGAAGTCTTCCCCCCCGCCCCCCAGCCTCTTGGCCCTGCAGGCA
TTTGCCAGCGGGCCGGAACCTTGATCTCCCCAGAATACCTTTCCGAAGCGCCCCTCACAG
TCAGAGCCAGCCACAAAGTCCCCAGGGGCAGAAGGGCTCCATTCATTGATGCATGGGCTG
TAATACCAGCCTTCATGGGCGCCCTGGCCTGCACCCCAGATCCTGGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-228, + strand, RNAz p=0.758259

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-228, + strand, RNAz p=0.758259

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001421, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001421, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-648, gnl|bosTau2|chrX (3924674-3924063)
               

               
               16-648, gnl|Hg17|chrX (128925870-128925193)
               

               
               16-648, gnl|Mm7|chrX (43506565-43505914)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-648, gnl|bosTau2|chrX (3924674-3924063)
               

               
               16-648, gnl|Hg17|chrX (128925870-128925193)
               

               
               16-648, gnl|Mm7|chrX (43506565-43505914)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	16-648, gnl\|bosTau2\|chrX (3924674-3924063)
	16-648, gnl\|Hg17\|chrX (128925870-128925193)
	16-648, gnl\|Mm7\|chrX (43506565-43505914)