Non-Coding RNA Search

Ss1.1-Pey1-10F10.5

Sequence:


               
               CGTGCCGGGGTCCTGATTCACAAGAGAAAGCTAGCCTAGATTAGCAATTTCAGCATTACT
ACTCTTGCTGAACTTTCTTTATGACGTTGCATTTGTGCATGGACAGTGCCTCCAAACTCA
GTTCCTACTTAAACAGATAGTATTTGGAAGCCTGAAAGTTCAGAATCTCAACTTTGTCGT
CTTTCCCTTTGTCCTGTGGCCTTCCTAAGCCAGCTCTTAACTTGCTGATTCCTTCTACTT
TCCCCAAGTAGGCAGGCAACAGAGACAGTATCTCTCTTAGAAAGTAGCTTGGCTCCTCGG
AACTTCATGGCATCCCAGTATTACCAACTCCACTTGGAACCAGACTGTCAGTTTACAGCT
CTCCAAGAAAAATCTGCCTCTTCCACACCGGGCGGTGGGTCCTGGTGGCTCCTAGGCACT
GTGGGCGTGTACCTTGGGAGAGCGACTCGGCGCAGTCACGGTGTCTCCTCAGGCCCTCAT
GCAGCCACGTGAGCAGTGAAACTTCAGGCGTCTCAGCTGAGGTGACTGTTTCCACAGCAC
CATGGATGCTTCAGTCAGATCAGATTTAACCACAGCTCTGGTTTTGACATGATGCCAATT
TTGTCTTAAAATTCACTGAGGAAAATGAGACAAAATATTTTTTTAAACCCTCAGGAGCAC
CTAAAGTAAATATTTATCAGTATTTAAGTATTTAAAATACGTTTTGTTTCTACTTGAAGC
TTTAACCCCTTCCATTCCTGCAAGTGTGCCTTGAGAGCCCCCACGTCATATTGACTCTAC
TGGCCACCTCGTTGACCTCGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGCCGGGGTCCTGATTCACAAGAGAAAGCTAGCCTAGATTAGCAATTTCAGCATTACT
ACTCTTGCTGAACTTTCTTTATGACGTTGCATTTGTGCATGGACAGTGCCTCCAAACTCA
GTTCCTACTTAAACAGATAGTATTTGGAAGCCTGAAAGTTCAGAATCTCAACTTTGTCGT
CTTTCCCTTTGTCCTGTGGCCTTCCTAAGCCAGCTCTTAACTTGCTGATTCCTTCTACTT
TCCCCAAGTAGGCAGGCAACAGAGACAGTATCTCTCTTAGAAAGTAGCTTGGCTCCTCGG
AACTTCATGGCATCCCAGTATTACCAACTCCACTTGGAACCAGACTGTCAGTTTACAGCT
CTCCAAGAAAAATCTGCCTCTTCCACACCGGGCGGTGGGTCCTGGTGGCTCCTAGGCACT
GTGGGCGTGTACCTTGGGAGAGCGACTCGGCGCAGTCACGGTGTCTCCTCAGGCCCTCAT
GCAGCCACGTGAGCAGTGAAACTTCAGGCGTCTCAGCTGAGGTGACTGTTTCCACAGCAC
CATGGATGCTTCAGTCAGATCAGATTTAACCACAGCTCTGGTTTTGACATGATGCCAATT
TTGTCTTAAAATTCACTGAGGAAAATGAGACAAAATATTTTTTTAAACCCTCAGGAGCAC
CTAAAGTAAATATTTATCAGTATTTAAGTATTTAAAATACGTTTTGTTTCTACTTGAAGC
TTTAACCCCTTCCATTCCTGCAAGTGTGCCTTGAGAGCCCCCACGTCATATTGACTCTAC
TGGCCACCTCGTTGACCTCGTGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               271-388, - strand, RNAz p=0.628621

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-388, - strand, RNAz p=0.628621

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-804, gnl|bosTau2|chr2 (83621353-83622147)
               

               
               1-804, gnl|Hg17|chr1 (16320497-16319684)
               

               
               1-804, gnl|Mm7|chr4 (140580851-140581581)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr2 (83621353-83622147)
               

               
               1-804, gnl|Hg17|chr1 (16320497-16319684)
               

               
               1-804, gnl|Mm7|chr4 (140580851-140581581)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-804, gnl\|bosTau2\|chr2 (83621353-83622147)
	1-804, gnl\|Hg17\|chr1 (16320497-16319684)
	1-804, gnl\|Mm7\|chr4 (140580851-140581581)