Non-Coding RNA Search

Ss1.1-Pey1-11A12.5

Sequence:


               
               CCACGCGTCCGAAAGGACTCTAAAAATTGCCAGGCGGGGAGGGAGGGGGACTACATTTGT
ATTGTAATAGATTTACAAAGTGTAGAAAAGCATCTTGATATATCCTGTGCCATTATTCTT
AATTTAGTAAAATTTTGAAATAAGTAAGGGAATTTAGAATTCTGGGCAGTGAGACCTTAG
CAGATTATGTCTTCCCCTGACCGAGCTCATTTTTATCTTTTACATTAATTGAACTAGTTT
ATATCTTACCCTATACTTAACATTAACAAAACTGCCTTTTTAAATATGCACTGTCATTTA
GGCAGTGTTCAGTTCCTCCAGCCTCCTGCCCTTGACTCTTTATACATAATTAATTGAGGT
TTAGTGAGTTTGGCATTAAAATGTGTCCTTTCAGAAAGAAGGTATTTTTCATGTTTGAGG
GGTGGCACCGCCTTTGTCTAATTCTTGCTTTACCATAACGACTTTGTTCAGTTCCATAAA
GACAGACTGTGCAGCAGGGAAAAAAAAACTTTTATGTCAGGGGTTGAGAAGTACTTGCCA
TAAGGAAAGTCTGCCTAAAAGAACATAATGTGCATTTCTTAAAATAAGCAAAAAAAAAAA
GTTAAAAATATAAACTCCATTTTATGGTATACATCAGAAACATTGAGAAAGCCTCTTCCA
GACAGAATGCTGAAAAGGTACAATAAGCTCCCTGCAAAGCATTTGAAAGCACTTAACAAA
TATCAGAGATGGTTTTCTCACAAAAACAATTTTTCTACTGACTAGCTCTATTGCCTGACC
CATCTGAGAAGCTGCAGGATTCTATACCAGCATCAGAACAGCAGAAATCTCCCTCTCGAG
GCTTAAAATAACAGAATTCAATAAACAGCACCTCTTTTAGGGACATTGCTGGGTGCTGTC
CTACGTGCTGAAGAGAAAACTGCCTTCAGTGAGCTTACCATCATCCTGAAGGAACAGGGC
AAGTGCACAGCTACCTGTAATGCAAACTGCAGAGCTGTAAATGGCACATATACATACTGC
AAAAGTGCAGTGGCAGTTTAAAGAGAAAAACTACTCTTTCCAGCTTGTTTTTTGCAGCTG
GGCCTCAAAGGATGGGGAAGATTTGGACAGGCAGACACTGGGATGCAGGAGGTGAAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGAAAGGACTCTAAAAATTGCCAGGCGGGGAGGGAGGGGGACTACATTTGT
ATTGTAATAGATTTACAAAGTGTAGAAAAGCATCTTGATATATCCTGTGCCATTATTCTT
AATTTAGTAAAATTTTGAAATAAGTAAGGGAATTTAGAATTCTGGGCAGTGAGACCTTAG
CAGATTATGTCTTCCCCTGACCGAGCTCATTTTTATCTTTTACATTAATTGAACTAGTTT
ATATCTTACCCTATACTTAACATTAACAAAACTGCCTTTTTAAATATGCACTGTCATTTA
GGCAGTGTTCAGTTCCTCCAGCCTCCTGCCCTTGACTCTTTATACATAATTAATTGAGGT
TTAGTGAGTTTGGCATTAAAATGTGTCCTTTCAGAAAGAAGGTATTTTTCATGTTTGAGG
GGTGGCACCGCCTTTGTCTAATTCTTGCTTTACCATAACGACTTTGTTCAGTTCCATAAA
GACAGACTGTGCAGCAGGGAAAAAAAAACTTTTATGTCAGGGGTTGAGAAGTACTTGCCA
TAAGGAAAGTCTGCCTAAAAGAACATAATGTGCATTTCTTAAAATAAGCAAAAAAAAAAA
GTTAAAAATATAAACTCCATTTTATGGTATACATCAGAAACATTGAGAAAGCCTCTTCCA
GACAGAATGCTGAAAAGGTACAATAAGCTCCCTGCAAAGCATTTGAAAGCACTTAACAAA
TATCAGAGATGGTTTTCTCACAAAAACAATTTTTCTACTGACTAGCTCTATTGCCTGACC
CATCTGAGAAGCTGCAGGATTCTATACCAGCATCAGAACAGCAGAAATCTCCCTCTCGAG
GCTTAAAATAACAGAATTCAATAAACAGCACCTCTTTTAGGGACATTGCTGGGTGCTGTC
CTACGTGCTGAAGAGAAAACTGCCTTCAGTGAGCTTACCATCATCCTGAAGGAACAGGGC
AAGTGCACAGCTACCTGTAATGCAAACTGCAGAGCTGTAAATGGCACATATACATACTGC
AAAAGTGCAGTGGCAGTTTAAAGAGAAAAACTACTCTTTCCAGCTTGTTTTTTGCAGCTG
GGCCTCAAAGGATGGGGAAGATTTGGACAGGCAGACACTGGGATGCAGGAGGTGAAAGAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               45-230, gnl|bosTau2|chr5 (34017994-34017809)
               

               
               45-230, gnl|Hg17|chr8 (27360178-27360366)
               

               
               45-230, gnl|Mm7|chr14 (61022795-61022606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-230, gnl|bosTau2|chr5 (34017994-34017809)
               

               
               45-230, gnl|Hg17|chr8 (27360178-27360366)
               

               
               45-230, gnl|Mm7|chr14 (61022795-61022606)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	45-230, gnl\|bosTau2\|chr5 (34017994-34017809)
	45-230, gnl\|Hg17\|chr8 (27360178-27360366)
	45-230, gnl\|Mm7\|chr14 (61022795-61022606)