Non-Coding RNA Search

Ss1.1-Pey1-11B10.5

Sequence:


               
               CGCACAGTGCCCCCGAGCCCCGGTCCTCCTGCGCCTGGTCTCCCAGCGCCTCTTCTTCCC
GCGCAGCGTCCGCTGAGCGCACCCGCAGCCATGGCCGCCTCCTCCGCGCAGCCCACAGTC
CTGGTCATGACCGCTCTGGCGCTGCTCTTGCTGCTGTGCCTGGGCCCAGGTGGCACAAAT
GGAAACAAACTCAAGCTGATGCTTCAGAAACGCAAAGCTCCTGCTCCATCTGAGACCCCG
GTGGCTGTCCGCGAGAGCAAGGCCAAGGAGTTCCTAAGCAGCCTGCGGCGCCAGAAGCGT
CAGCTGTGGGACCGCACGCGCCCGGAGGTGCAGCAGTGGTATCAGCACTTCCTGTACCTG
GGCTTCGACGAAGCGAAATTCGAGGATGACATCACCTACTGGCTCAATAGAGACCGCAAT
GGGGACGATGACTACGATCACTACCAGCGGCACTATGACGAGGATGCGGCCATCGGTCCC
CGGAGCCCCCACAGCTTCAGGTATGGGGCCAGCGTCAACTACGACGACTACTGACCAGCA
CGTGAGCCCCGCACAACGCCTGGGGCCCTGTCTGCTGTGCCTCGTCTCAGCTGGCCTTCC
CTCCCCACAATCTGCGGCCAGAATGGAAGCATTCAAAGAATATACCTGCCTTCAGAGAGT
TCATGCAAGTACCCAACCGCGCATGTCACTGAAAAGTAGAAATAAAAGCATTTTGTTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACAGTGCCCCCGAGCCCCGGTCCTCCTGCGCCTGGTCTCCCAGCGCCTCTTCTTCCC
GCGCAGCGTCCGCTGAGCGCACCCGCAGCCATGGCCGCCTCCTCCGCGCAGCCCACAGTC
CTGGTCATGACCGCTCTGGCGCTGCTCTTGCTGCTGTGCCTGGGCCCAGGTGGCACAAAT
GGAAACAAACTCAAGCTGATGCTTCAGAAACGCAAAGCTCCTGCTCCATCTGAGACCCCG
GTGGCTGTCCGCGAGAGCAAGGCCAAGGAGTTCCTAAGCAGCCTGCGGCGCCAGAAGCGT
CAGCTGTGGGACCGCACGCGCCCGGAGGTGCAGCAGTGGTATCAGCACTTCCTGTACCTG
GGCTTCGACGAAGCGAAATTCGAGGATGACATCACCTACTGGCTCAATAGAGACCGCAAT
GGGGACGATGACTACGATCACTACCAGCGGCACTATGACGAGGATGCGGCCATCGGTCCC
CGGAGCCCCCACAGCTTCAGGTATGGGGCCAGCGTCAACTACGACGACTACTGACCAGCA
CGTGAGCCCCGCACAACGCCTGGGGCCCTGTCTGCTGTGCCTCGTCTCAGCTGGCCTTCC
CTCCCCACAATCTGCGGCCAGAATGGAAGCATTCAAAGAATATACCTGCCTTCAGAGAGT
TCATGCAAGTACCCAACCGCGCATGTCACTGAAAAGTAGAAATAAAAGCATTTTGTTAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819351|ref|XP_593102.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819351|ref|XP_593102.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               375-722, gnl|bosTau2|chr11 (37057376-37057744)
               

               
               375-722, gnl|Hg17|chr2 (106152738-106153124)
               

               
               375-722, gnl|Mm7|chr1 (43982631-43982960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               375-722, gnl|bosTau2|chr11 (37057376-37057744)
               

               
               375-722, gnl|Hg17|chr2 (106152738-106153124)
               

               
               375-722, gnl|Mm7|chr1 (43982631-43982960)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cag (0.453583)
               

               
               mas (0.42061)
               

               
               nca (0.410621)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               mas (0.42061)
               

               
               nca (0.410621)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	375-722, gnl\|bosTau2\|chr11 (37057376-37057744)
	375-722, gnl\|Hg17\|chr2 (106152738-106153124)
	375-722, gnl\|Mm7\|chr1 (43982631-43982960)

	cag (0.453583)
	mas (0.42061)
	nca (0.410621)
	cga (0.279096)
	fce (0.271592)
	nep (0.183925)
	mcp (0.170648)
	csp (0.161186)
	lnt (0.142308)
	cov (0.132153)
	med (0.116252)