Non-Coding RNA Search

Ss1.1-Pey1-13B03.5

Sequence:


               
               TGATGAAGATAAGACTTTTGATGAAAGTGACTTTGATGATGAAGCATACTATGCAGCCTT
GGGAACTCGGCCACCTATTAATATGGAAGAATTGGATGCAACGTACCAGAAGGTAATTGA
GCTCTTCTCTGTATGCACCAATGAAGACCCTAAGGATCGCCCTTCTGCTGCGCACATTGT
TGCCGCTTTGGAAATGGATGTCCTGTGAGCACCTCACACTCATGCCTACCACAGCTTCAA
AAGTATGGTTCGGGTGTATAGCTGTTCTGTTTACCATAGTACATTTATCTCGCTACCATG
ATGATCCATAATTGTTAGGCTGTTTGGAAGTAACCTGTTTTAGGACCATAGATAACACCT
TGATAACATTTGAACAACTATTTTTATTATAACGGTGTTACATGTATGCTTACGCTGATA
AGCATTTGAGATTGTAGAGGGCTTTCTATAAAAGTTTAAGAAACTAGCTACTCAAGTATT
TGAACTTGTTTATACAGATTTAAAACACTAGCAATAAAGTGCTGTAATCTCTGATGTCTA
ACATCTGGATTGAGTGACCATTATTTTTCTTAATGCTCTTTCTCAGTCTTTTAATGGAGC
TATTGAAATTAGCACTTTGTATATTACAAAATAAGTCTACATTTGCTTTTTTAAAACTTT
AAACCTTTTGCTGGTCTTTCCTGGTTAATGTGCTTATTAACTATGGTCACTGAGACTAAG
AGACCTGGGATATGGCTTGAAGGAGTAGCTTCTTGGTTATCTCCAAATATTCTTGGTTAA
GGCTTGTCTTGCTTTCGTGGCTCTACCCAGATCTTTGGTTTTTGCTCTATTAAATGTATT
TTCTGTACTGATAGCTTTTAAATGTTTTAATTTACTAATCTATCATATGCATTTCATAGT
ATTGTAAAAATAAAATTCTAACAGAATATAGAATAAAGGACACTTTAGTTACCAGAAAAT
AAAAAAAAAAAAACTCCCTTTATTTGAGTGTTATTAAAATTACTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGAAGATAAGACTTTTGATGAAAGTGACTTTGATGATGAAGCATACTATGCAGCCTT
GGGAACTCGGCCACCTATTAATATGGAAGAATTGGATGCAACGTACCAGAAGGTAATTGA
GCTCTTCTCTGTATGCACCAATGAAGACCCTAAGGATCGCCCTTCTGCTGCGCACATTGT
TGCCGCTTTGGAAATGGATGTCCTGTGAGCACCTCACACTCATGCCTACCACAGCTTCAA
AAGTATGGTTCGGGTGTATAGCTGTTCTGTTTACCATAGTACATTTATCTCGCTACCATG
ATGATCCATAATTGTTAGGCTGTTTGGAAGTAACCTGTTTTAGGACCATAGATAACACCT
TGATAACATTTGAACAACTATTTTTATTATAACGGTGTTACATGTATGCTTACGCTGATA
AGCATTTGAGATTGTAGAGGGCTTTCTATAAAAGTTTAAGAAACTAGCTACTCAAGTATT
TGAACTTGTTTATACAGATTTAAAACACTAGCAATAAAGTGCTGTAATCTCTGATGTCTA
ACATCTGGATTGAGTGACCATTATTTTTCTTAATGCTCTTTCTCAGTCTTTTAATGGAGC
TATTGAAATTAGCACTTTGTATATTACAAAATAAGTCTACATTTGCTTTTTTAAAACTTT
AAACCTTTTGCTGGTCTTTCCTGGTTAATGTGCTTATTAACTATGGTCACTGAGACTAAG
AGACCTGGGATATGGCTTGAAGGAGTAGCTTCTTGGTTATCTCCAAATATTCTTGGTTAA
GGCTTGTCTTGCTTTCGTGGCTCTACCCAGATCTTTGGTTTTTGCTCTATTAAATGTATT
TTCTGTACTGATAGCTTTTAAATGTTTTAATTTACTAATCTATCATATGCATTTCATAGT
ATTGTAAAAATAAAATTCTAACAGAATATAGAATAAAGGACACTTTAGTTACCAGAAAAT
AAAAAAAAAAAAACTCCCTTTATTTGAGTGTTATTAAAATTACTGAGT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               7-957, gnl|bosTau2|chr8 (6084209-6085128)
               

               
               7-957, gnl|Hg17|chr8 (27723939-27723057)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-957, gnl|bosTau2|chr8 (6084209-6085128)
               

               
               7-957, gnl|Hg17|chr8 (27723939-27723057)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               tes (0.623441)
               

               
               thg (0.253582)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               thg (0.253582)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	7-957, gnl\|bosTau2\|chr8 (6084209-6085128)
	7-957, gnl\|Hg17\|chr8 (27723939-27723057)

	tes (0.623441)
	thg (0.253582)
	col (0.195008)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	nco (0.161734)
	isp (0.150376)
	spl (0.143184)
	nca (0.136874)
	ova (0.129132)
	tra (0.123092)
	eje (0.0988338)